/// <summary>
///
/// </summary>
/// <param name="entryBuInterfaceHashes"></param>
public void ComapreEntryBuInterfaces(string pdbId, Dictionary <string, InterfaceChains[]>[] entryBuInterfaceHashes)
{
Dictionary <string, InterfacePairInfo[]> pdbPisaBuInterfaceCompHash = CompareEntryBuInterfaces(entryBuInterfaceHashes[(int)BuType.PDB], entryBuInterfaceHashes[(int)BuType.PISA]);
InsertDataIntoTables(pdbId, pdbPisaBuInterfaceCompHash, "pdbpisa");
dbInsert.InsertDataIntoDBtables(ProtCidSettings.buCompConnection, EntryBuCompTables.entryBuCompTables);
EntryBuCompTables.ClearTables();
}
/// <summary>
///
/// </summary>
public void CompareEntryBUs()
{
ProtCidSettings.progressInfo.ResetCurrentProgressInfo();
ProtCidSettings.progressInfo.currentOperationLabel = "Compare Entry BUs";
string queryString = "Select Distinct PdbID From AsymUNit Where PolymerType = 'polypeptide';";
DataTable protEntryTable = dbQuery.Query(ProtCidSettings.pdbfamDbConnection, queryString);
EntryBuCompTables.InitializeTables();
EntryBuCompTables.InitializeDbTables();
ProtCidSettings.progressInfo.totalOperationNum = protEntryTable.Rows.Count;
ProtCidSettings.progressInfo.totalStepNum = protEntryTable.Rows.Count;
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Compare Entry BUs");
string pdbId = "";
foreach (DataRow entryRow in protEntryTable.Rows)
{
pdbId = entryRow["PdbID"].ToString();
ProtCidSettings.progressInfo.currentOperationNum++;
ProtCidSettings.progressInfo.currentStepNum++;
ProtCidSettings.progressInfo.currentFileName = pdbId;
try
{
CompareEntryBUs(pdbId);
}
catch (Exception ex)
{
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Compare " + pdbId + " entry BUs errors: " + ex.Message);
#if DEBUG
logWriter.WriteLine("Compare " + pdbId + " entry BUs errors: " + ex.Message);
#endif
}
}
#if DEBUG
logWriter.Close();
#endif
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Done!");
}
/// <summary>
///
/// </summary>
public void CompareMissingEntryBUs()
{
ProtCidSettings.progressInfo.ResetCurrentProgressInfo();
ProtCidSettings.progressInfo.currentOperationLabel = "Compare Entry BUs";
string[] missingEntries = GetMissingEntries();
EntryBuCompTables.InitializeTables();
ProtCidSettings.progressInfo.totalOperationNum = missingEntries.Length;
ProtCidSettings.progressInfo.totalStepNum = missingEntries.Length;
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Compare Entry BUs");
foreach (string pdbId in missingEntries)
{
ProtCidSettings.progressInfo.currentOperationNum++;
ProtCidSettings.progressInfo.currentStepNum++;
ProtCidSettings.progressInfo.currentFileName = pdbId;
try
{
CompareEntryBUs(pdbId);
}
catch (Exception ex)
{
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Compare " + pdbId + " entry BUs errors: " + ex.Message);
#if DEBUG
logWriter.WriteLine("Compare " + pdbId + " entry BUs errors: " + ex.Message);
#endif
}
}
#if DEBUG
logWriter.Close();
#endif
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Done!");
}
/// <summary>
///
/// </summary>
public void UpdateComparingEntryBUs(string[] updatedEntries)
{
EntryBuCompTables.InitializeTables();
ProtCidSettings.progressInfo.ResetCurrentProgressInfo();
ProtCidSettings.progressInfo.currentOperationLabel = "Compare Entry BUs";
ProtCidSettings.progressInfo.totalOperationNum = updatedEntries.Length;
ProtCidSettings.progressInfo.totalStepNum = updatedEntries.Length;
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Update Comparing Entry BUs");
foreach (string pdbId in updatedEntries)
{
ProtCidSettings.progressInfo.currentOperationNum++;
ProtCidSettings.progressInfo.currentStepNum++;
ProtCidSettings.progressInfo.currentFileName = pdbId;
try
{
DeleteObsDataInDb(pdbId);
CompareEntryBUs(pdbId);
}
catch (Exception ex)
{
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Compare " + pdbId + " entry BUs errors: " + ex.Message);
#if DEBUG
logWriter.WriteLine("Compare " + pdbId + " entry BUs errors: " + ex.Message);
#endif
}
}
#if DEBUG
logWriter.Close();
#endif
ProtCidSettings.progressInfo.progStrQueue.Enqueue("Done!");
// ProtCidSettings.progressInfo.threadFinished = true;
}