/// <summary>
/// Returns an iterator over a set of SAMAlignedSequences retrieved from a parsed BAM file.
/// </summary>
/// <param name="parser">Parser</param>
/// <param name="filename">Filename</param>
/// <returns>IEnumerable SAMAlignedSequence object.</returns>
public static IEnumerable <PacBioCCSRead> Parse(this PacBioCCSBamReader parser, string filename)
{
if (parser == null)
{
throw new ArgumentNullException("parser");
}
if (filename == null)
{
throw new ArgumentNullException("filename");
}
using (var fs = File.OpenRead(filename))
{
foreach (var item in PacBioCCSBamReader.Parse(fs))
{
yield return(item);
}
}
}
public ISequence ParseOne(Stream stream)
{
return(PacBioCCSBamReader.Parse(stream).First());
}
IEnumerable <ISequence> IParser <ISequence> .Parse(Stream stream)
{
return(PacBioCCSBamReader.Parse(stream));
}