/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other MiscBinding instance.</param>
private MiscBinding(MiscBinding other)
: base(other) { }
/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other MiscBinding instance.</param>
private MiscBinding(MiscBinding other)
: base(other)
{
}
/// <summary>
/// Validate MiscBinding features
/// </summary>
/// <param name="nodeName">XML node name</param>
/// <param name="genMetadata">GenBank Metadata</param>
private void ValidateGenBankMiscBindingFeature(string nodeName,
GenBankMetadata genMetadata)
{
// Get Values from XML node.
string expectedLocation = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.Location);
string expectedAllele = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.AlleleNode);
string featureCount = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.QualifierCount);
string expectedDbReference = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.DbReferenceNode);
string geneSymbol = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.GeneSymbol);
string expectedCitation = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.CitationNode);
string expectedExperiment = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ExperimentNode);
string expectedGeneSynonym = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.GeneSynonymNode);
string expectedInference = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.InferenceNode);
string expectedLabel = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.LabelNode);
string expectedLocusTag = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.LocusTagNode);
string expectedNote = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.Note);
string expectedOldLocusTag = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.OldLocusTagNode);
string expectedMap = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.GenbankMapNode);
List<MiscBinding> miscBindingFeatureList = genMetadata.Features.MiscBindings;
var locBuilder = new LocationBuilder();
// Create a copy of Misc Binding feature.
MiscBinding cloneMiscBinding = miscBindingFeatureList[0].Clone();
// Validate Misc Binding qualifiers.
Assert.AreEqual(miscBindingFeatureList.Count.ToString((IFormatProvider) null),
featureCount);
Assert.AreEqual(cloneMiscBinding.GeneSymbol,
geneSymbol);
Assert.AreEqual(cloneMiscBinding.DatabaseCrossReference[0],
expectedDbReference);
Assert.AreEqual(miscBindingFeatureList[0].Allele,
expectedAllele);
Assert.AreEqual(miscBindingFeatureList[0].Citation[0],
expectedCitation);
Assert.AreEqual(miscBindingFeatureList[0].Experiment[0],
expectedExperiment);
Assert.AreEqual(miscBindingFeatureList[0].GenomicMapPosition,
expectedMap);
Assert.AreEqual(miscBindingFeatureList[0].GeneSynonym[0],
expectedGeneSynonym);
Assert.AreEqual(miscBindingFeatureList[0].Inference[0],
expectedInference);
Assert.AreEqual(miscBindingFeatureList[0].Label,
expectedLabel);
Assert.AreEqual(locBuilder.GetLocationString(
genMetadata.Features.MiscBindings[0].Location),
expectedLocation);
Assert.AreEqual(miscBindingFeatureList[0].Note[0],
expectedNote);
Assert.AreEqual(miscBindingFeatureList[0].OldLocusTag[0],
expectedOldLocusTag);
Assert.AreEqual(miscBindingFeatureList[0].LocusTag[0],
expectedLocusTag);
// Create a new MiscBinding and validate the same.
var miscBinding = new MiscBinding(expectedLocation);
var miscBindingWithILoc = new MiscBinding(
genMetadata.Features.MiscBindings[0].Location);
// Set qualifiers and validate them.
miscBinding.Allele = expectedAllele;
miscBinding.GeneSymbol = geneSymbol;
miscBindingWithILoc.GenomicMapPosition = expectedMap;
Assert.AreEqual(miscBinding.GeneSymbol, geneSymbol);
Assert.AreEqual(miscBinding.Allele, expectedAllele);
Assert.AreEqual(miscBindingWithILoc.GenomicMapPosition,
expectedMap);
}
