// Turn int[,] containing pixel grey color values and cluster bounding boxes' contour into bitmap pixel colours
private void Draw(int[,] marked)
{
Bitmap bmp = new Bitmap(marked.GetLength(0), marked.GetLength(1));
for (int y = 0; y < marked.GetLength(1); y++)
{
for (int x = 0; x < marked.GetLength(0); x++)
{
if (marked[x, y] == -1)
{
bmp.SetPixel(x, y, System.Drawing.Color.Green);
}
else
{
bmp.SetPixel(x, y, DifferenceComputation.getGrey(255 - marked[x, y]));
}
}
}
bmp.Save(@"Resources\Result.bmp");
}
private void startTracking()
{
Bitmap[] images = new Bitmap[11];
images[0] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C1.png"));
images[1] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C2.png"));
images[2] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\MergingTest.png"));
images[3] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C4.png"));
images[4] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C5.png"));
images[5] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C6.png"));
images[6] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C7.png"));
images[7] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C8.png"));
images[8] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C9.png"));
images[9] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C10.png"));
images[10] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C11.png"));
Tracking t = new Tracking();
for (int i = 1; i < 11; i++)
{
// Repositioning finding and executing difference between the two images
int[] positions = Matching_Robinson.RobinsonRepositioning(images[0], images[i]);
Map resultDifference = DifferenceComputation.getManhattan(images[0], images[i], positions);
List <Cluster> frameBlobs = FindObjects(resultDifference);
Console.WriteLine("Tracking " + i + ": " + frameBlobs.Count + " blobs encountered");
if (t.isEmpty())
{
t.firstScan(frameBlobs, i);
}
else
{
t.assignBlobs(frameBlobs, i);
}
Console.WriteLine();
}
List <List <Cluster> > results = t.getTracking();
// Tracking results siso
Console.WriteLine();
Console.WriteLine(results.Count + " different blobs being tracked");
List <double> numberOfColonies = new List <double>();
ChartHandler ch = new ChartHandler();
string p, dir;
string[] title;
for (int i = 0; i < results.Count; i++)
{
double[] data = new double[results.ElementAt(i).Count];
dir = (System.IO.Path.Combine(Environment.GetFolderPath(Environment.SpecialFolder.Desktop), "CharTest", "ClusterN" + i));
Directory.CreateDirectory(dir);
p = "ClusterTrack_" + i.ToString() + ".txt";
FileStream f = File.Create(System.IO.Path.Combine(dir, p));
f.Close();
File.AppendAllText(System.IO.Path.Combine(dir, p), "Blob " + i + ": " + results.ElementAt(i).Count + " steps tracked" + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), Environment.NewLine);
for (int j = 0; j < results.ElementAt(i).Count; j++)
{
data[j] = results.ElementAt(i).ElementAt(j).getSize();
File.AppendAllText(System.IO.Path.Combine(dir, p), "Track " + j + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), " ID = " + results.ElementAt(i).ElementAt(j).getId() + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), " Size = " + results.ElementAt(i).ElementAt(j).getSize() + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), " Encounter step = " + results.ElementAt(i).ElementAt(j).getStep() + Environment.NewLine);
if (results.ElementAt(i).ElementAt(j).getFather() != -1)
{
File.AppendAllText(System.IO.Path.Combine(dir, p), " Merged to branch : " + results.ElementAt(i).ElementAt(j).getFather() + Environment.NewLine);
}
if (results.ElementAt(i).ElementAt(j).getBranches().Count > 0)
{
for (int n = 0; n < results.ElementAt(i).ElementAt(j).getBranches().Count; n++)
{
File.AppendAllText(System.IO.Path.Combine(dir, p), " Branch with ID: " + results.ElementAt(i).ElementAt(j).getBranches().ElementAt(n).Last().getId() + " added");
if (results.ElementAt(i).ElementAt(j).getBranches().ElementAt(n).Last().hasMergedWithDifferent())
{
File.AppendAllText(System.IO.Path.Combine(dir, p), " from a different colony." + Environment.NewLine);
}
else
{
File.AppendAllText(System.IO.Path.Combine(dir, p), " from the same colony." + Environment.NewLine);
}
}
}
File.AppendAllText(System.IO.Path.Combine(dir, p), Environment.NewLine);
if (numberOfColonies.Count <= results.ElementAt(i).ElementAt(j).getStep())
{
for (int n = numberOfColonies.Count; n < results.ElementAt(i).ElementAt(j).getStep() - 1; n++)
{
numberOfColonies.Add(0);
}
numberOfColonies.Add(1);
}
else
{
numberOfColonies[results.ElementAt(i).ElementAt(j).getStep() - 1]++;
}
}
title = new string[] { "Colony " + results.ElementAt(i).ElementAt(0).getId() + " Size evolution over time", " Size (pixels) ", " Capture " };
p = "SizeChart.png";
ch.barCharConstruct(data, System.IO.Path.Combine(dir, p), title);
}
p = "ColonyChart.png";
dir = System.IO.Path.Combine(Environment.GetFolderPath(Environment.SpecialFolder.Desktop), "CharTest");
title = new string[] { "Population evolution", " Number of colonies", " Capture " };
ch.barCharConstruct(numberOfColonies.ToArray(), System.IO.Path.Combine(dir, p), title);
this.Hide();
}
private void startTracking()
{
Bitmap[] images = new Bitmap[11];
images[0] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C1.png"));
images[1] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C2.png"));
images[2] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\MergingTest.png"));
images[3] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C4.png"));
images[4] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C5.png"));
images[5] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C6.png"));
images[6] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C7.png"));
images[7] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C8.png"));
images[8] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C9.png"));
images[9] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C10.png"));
images[10] = new Bitmap(System.Drawing.Image.FromFile(@"Resources\Captures\C11.png"));
Tracking t = new Tracking();
for (int i = 1; i < 11; i++)
{
// Repositioning finding and executing difference between the two images
int[] positions = Matching_Robinson.RobinsonRepositioning(images[0], images[i]);
int[,] resultDifference = DifferenceComputation.getManhattan(images[0], images[i], positions);
List <Cluster> frameBlobs = FindObjects(resultDifference);
Console.WriteLine("Tracking " + i + ": " + frameBlobs.Count + " blobs encountered");
if (t.isEmpty())
{
t.firstScan(frameBlobs, i);
}
else
{
t.assignBlobs(frameBlobs, i);
}
Console.WriteLine();
}
List <List <Cluster> > results = t.getTracking();
// Tracking results siso
Console.WriteLine();
Console.WriteLine(results.Count + " different blobs being tracked");
for (int i = 0; i < results.Count; i++)
{
double[] data = new double[results.ElementAt(i).Count];
string dir = (System.IO.Path.Combine(Environment.GetFolderPath(Environment.SpecialFolder.Desktop), "CharTest", "ClusterN" + i));
Directory.CreateDirectory(dir);
string p = "ClusterTrack_" + i.ToString() + ".txt";
FileStream f = File.Create(System.IO.Path.Combine(dir, p));
f.Close();
File.AppendAllText(System.IO.Path.Combine(dir, p), "Blob " + i + ": " + results.ElementAt(i).Count + " steps tracked" + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), Environment.NewLine);
for (int j = 0; j < results.ElementAt(i).Count; j++)
{
data[j] = results.ElementAt(i).ElementAt(j).getSize();
File.AppendAllText(System.IO.Path.Combine(dir, p), "Track " + j + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), " ID = " + results.ElementAt(i).ElementAt(j).getId() + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), " Size = " + results.ElementAt(i).ElementAt(j).getSize() + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), " Encounter step = " + results.ElementAt(i).ElementAt(j).getStep() + Environment.NewLine);
File.AppendAllText(System.IO.Path.Combine(dir, p), Environment.NewLine);
}
ChartHandler ch = new ChartHandler();
ch.barCharConstruct(data, i, dir);
}
this.Hide();
}
