/// <summary>
///
/// </summary>
/// <param name="pdbId"></param>
/// <param name="entityId"></param>
public void UpdateEntryEntityDbRefData(string pdbId, nt entityId, ref int refId, ref int alignId)
{
string srcType = "";
bool dbAccValid = true;
string[] dbAccessions = GetUnpAccessions(pdbId, entityId, out srcType, true);
try
{
dbAccValid = DoesEntityHaveValidDbAccessions(dbAccessions);
}
catch (Exception ex)
{
string stop = "";
}
if (dbAccValid && srcType != "")
{
updateLogWriter.WriteLine("Update " + pdbId + entityId.ToString () + " from " + srcType);
// delete related data to this entity
DeleteDbRefData(pdbId, entityId);
totalNumOfEntitiesUpdated++;
DataTable residueMapTable = GetEntityResidueMapTable(pdbId, entityId, srcType);
UpdatePdbDbRefInfoFromDifSrc(residueMapTable, ref refId, ref alignId, srcType);
/* if (srcType == "ssmap")
{
UpdatePdbDbRefFromSSmap(residueMapTable, ref refId, ref alignId);
}
else if (srcType == "sws")
{
UpdatePdbDbRefFromSws(residueMapTable, ref refId, ref alignId);
}
*/
dbInsert.InsertDataIntoDBtables(dbRefTable);
dbInsert.InsertDataIntoDBtables(dbRefSeqTable);
dbRefTable.Clear();
dbRefSeqTable.Clear();
}
}
