internal static global::System.Runtime.InteropServices.HandleRef getCPtr(image_dimensions obj)
{
return((obj == null) ? new global::System.Runtime.InteropServices.HandleRef(null, global::System.IntPtr.Zero) : obj.swigCPtr);
}
public info(string name, string date, string instrument_name, uint run_number, uint version, flowcell_layout flowcell, string_vector channels, image_dimensions image_dim) : this(c_csharp_runPINVOKE.new_info__SWIG_1(name, date, instrument_name, run_number, version, flowcell_layout.getCPtr(flowcell), string_vector.getCPtr(channels), image_dimensions.getCPtr(image_dim)), true)
{
if (c_csharp_runPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve();
}
}
protected override void SetUp()
{
string xml_file = "<?xml version=\"1.0\"?>\n" +
"<RunInfo xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" Version=\"2\">\n" +
" <Run Id=\"120705_M00903_0009_A000000000-A12V4\" Number=\"8\">\n" +
" <Flowcell>000000000-A12V4</Flowcell>\n" +
" <Instrument>M00903</Instrument>\n" +
" <Date>120705</Date>\n" +
" <Reads>\n" +
" <Read NumCycles=\"251\" Number=\"1\" IsIndexedRead=\"N\" />\n" +
" <Read NumCycles=\"12\" Number=\"2\" IsIndexedRead=\"Y\" />\n" +
" <Read NumCycles=\"251\" Number=\"3\" IsIndexedRead=\"N\" />\n" +
" </Reads>\n" +
" <FlowcellLayout LaneCount=\"1\" SurfaceCount=\"2\" SwathCount=\"1\" TileCount=\"14\" />\n" +
" </Run>\n" +
"</RunInfo>";
string_vector Tiles = new string_vector();
string_vector ImageChannels = new string_vector();
read_info[] ReadsArr = new read_info[] {
/*Number, IsIndexedRead, CycleStart, CycleEnd*/
new read_info(1, 1, 251, false),
new read_info(2, 252, 263, true),
new read_info(3, 264, 514, false)
};
read_info_vector Reads = new read_info_vector();
for (int i = 0; i < ReadsArr.Length; i++)
{
Reads.Add(ReadsArr[i]);
}
tile_naming_method TileNamingConvention = tile_naming_method.UnknownTileNamingMethod;
uint LaneCount = 1;
uint SurfaceCount = 2;
uint SwathCount = 1;
uint TileCount = 14;
uint SectionPerLane = 1;
uint LanePerSection = 1;
flowcell_layout FlowcellLayout = new flowcell_layout(
LaneCount,
SurfaceCount,
SwathCount,
TileCount,
SectionPerLane,
LanePerSection,
Tiles,
TileNamingConvention);
string Run_Id = "120705_M00903_0009_A000000000-A12V4";
string Date = "120705";
string InstrumentName = "M00903";
uint RunNumber = 8;
uint version = 2;
image_dimensions ImageDimensions = new image_dimensions(/*Width*/ 0, /*Height*/ 0);
expected_run_info = new info(Run_Id,
Date,
InstrumentName,
RunNumber,
version,
FlowcellLayout,
ImageChannels,
ImageDimensions,
Reads);
run_info.parse(xml_file);
}
public image_dimensions dimensions_of_image()
{
image_dimensions ret = new image_dimensions(c_csharp_runPINVOKE.info_dimensions_of_image(swigCPtr), false);
return(ret);
}
