public String buscaSequencia(String ids)
{
String dados = "";
try
{
eFetchSeq.eUtilsServiceSoapClient serv = new eFetchSeq.eUtilsServiceSoapClient();
// call NCBI ESpell utility
eFetchSeq.eFetchRequest req = new eFetchSeq.eFetchRequest();
req.db = "nuccore";
req.id = ids;
eFetchSeq.eFetchResult res = serv.run_eFetch(req);
MessageBox.Show(Convert.ToString(res.GBSet.GBSeq.Length) + " Sequencias encontradas");
// results output
List<string> fasta = gBankToFasta(res.GBSet.GBSeq);
StringBuilder builder2 = new StringBuilder();
for (int i = 0; i < fasta.Count; i++)
{
builder2.Append(fasta[i]);
builder2.Append("----------------------\r\n\r\n");
}
dados = builder2.ToString();
return dados;
/* for (int i = 0; i < res.GBSet.GBSeq.Length; i++)
{
textBox1.Text += "Organism: " + res.GBSet.GBSeq[i].GBSeq_organism + "\r\n";
textBox1.Text += "Locus: " + res.GBSet.GBSeq[i].GBSeq_locus + "\r\n";
textBox1.Text += "Definition: " + res.GBSet.GBSeq[i].GBSeq_definition + "\r\n";
textBox1.Text += "Sequence: " + res.GBSet.GBSeq[i].GBSeq_sequence + " \r\n";
textBox1.Text += "----------------------\r\n\r\n";
}
*/
}
catch (Exception eee)
{
dados = eee.ToString();
return dados;
}
}
private void btnGenBank_Click(object sender, EventArgs e)
{
// STEP #3: fetch records from nuccore
//
try
{
eFetchSeq.eUtilsServiceSoapClient serv = new eFetchSeq.eUtilsServiceSoapClient();
// call NCBI ESpell utility
eFetchSeq.eFetchRequest req = new eFetchSeq.eFetchRequest();
req.db = "nuccore";
req.id = this.txtId.Text;
eFetchSeq.eFetchResult res = serv.run_eFetch(req);
// results output
for (int i = 0; i < res.GBSet.GBSeq.Length; i++)
{
textBox1.Text += "Organism: " + res.GBSet.GBSeq[i].GBSeq_organism + "\r\n";
textBox1.Text += "Locus: " + res.GBSet.GBSeq[i].GBSeq_locus + "\r\n";
textBox1.Text += "Definition: " + res.GBSet.GBSeq[i].GBSeq_definition + "\r\n";
textBox1.Text += "Sequence: " + res.GBSet.GBSeq[i].GBSeq_sequence + " \r\n";
textBox1.Text += "----------------------\r\n\r\n";
}
}
catch (Exception eee)
{
textBox1.Text = eee.ToString();
}
}
