private int GetMatrixLength(clsReporterIons.eReporterIonMassModeConstants eReporterIonMode)
{
switch (eReporterIonMode)
{
case clsReporterIons.eReporterIonMassModeConstants.ITraqFourMZ:
return(FOUR_PLEX_MATRIX_LENGTH);
case clsReporterIons.eReporterIonMassModeConstants.ITraqEightMZHighRes:
return(EIGHT_PLEX_HIGH_RES_MATRIX_LENGTH);
case clsReporterIons.eReporterIonMassModeConstants.ITraqEightMZLowRes:
return(EIGHT_PLEX_LOW_RES_MATRIX_LENGTH);
case clsReporterIons.eReporterIonMassModeConstants.TMTTenMZ:
return(TEN_PLEX_TMT_MATRIX_LENGTH);
case clsReporterIons.eReporterIonMassModeConstants.TMTElevenMZ:
return(ELEVEN_PLEX_TMT_MATRIX_LENGTH);
case clsReporterIons.eReporterIonMassModeConstants.TMTSixteenMZ:
return(SIXTEEN_PLEX_TMT_MATRIX_LENGTH);
default:
throw new ArgumentOutOfRangeException("Invalid value for eReporterIonMode in GetMatrixLength: " + eReporterIonMode.ToString());
}
}
/// <summary>
/// Change the reporter ion mode
/// </summary>
/// <param name="eReporterIonMode"></param>
/// <param name="iTraqCorrectionFactorType"></param>
public void UpdateReporterIonMode(clsReporterIons.eReporterIonMassModeConstants eReporterIonMode, eCorrectionFactorsiTRAQ4Plex iTraqCorrectionFactorType)
{
if (ReporterIonMode != eReporterIonMode || ITraq4PlexCorrectionFactorType != iTraqCorrectionFactorType)
{
ReporterIonMode = eReporterIonMode;
ITraq4PlexCorrectionFactorType = iTraqCorrectionFactorType;
InitializeCoefficients(true);
}
}
/// <summary>
/// Constructor
/// </summary>
/// <param name="eReporterIonMode">iTRAQ or TMT mode</param>
/// <param name="iTraqCorrectionFactorType">Correction factor type for 4-plex iTRAQ</param>
/// <remarks>The iTraqCorrectionFactorType parameter is only used if eReporterIonMode is ITraqFourMZ</remarks>
public clsITraqIntensityCorrection(clsReporterIons.eReporterIonMassModeConstants eReporterIonMode, eCorrectionFactorsiTRAQ4Plex iTraqCorrectionFactorType)
{
ReporterIonMode = eReporterIonMode;
ITraq4PlexCorrectionFactorType = iTraqCorrectionFactorType;
mMatrixUtility = new MatrixDecompositionUtility.LUDecomposition();
if (ReporterIonMode == clsReporterIons.eReporterIonMassModeConstants.CustomOrNone)
{
return;
}
InitializeCoefficients(false);
}
/// <summary>
/// Constructor; assumes iTraqCorrectionFactorType = eCorrectionFactorsiTRAQ4Plex.ABSciex
/// </summary>
/// <param name="eReporterIonMode">iTRAQ or TMT mode</param>
/// <remarks></remarks>
public clsITraqIntensityCorrection(clsReporterIons.eReporterIonMassModeConstants eReporterIonMode)
: this(eReporterIonMode, eCorrectionFactorsiTRAQ4Plex.ABSciex)
{
}
/// <summary>
/// Change the reporter ion mode
/// </summary>
/// <param name="eReporterIonMode"></param>
public void UpdateReporterIonMode(clsReporterIons.eReporterIonMassModeConstants eReporterIonMode)
{
UpdateReporterIonMode(eReporterIonMode, ITraq4PlexCorrectionFactorType);
}
