private void Open_Click(object sender, RoutedEventArgs e)
{
OpenFileDialog dlg = new OpenFileDialog();
dlg.Filter = "Mediendateien(*.avi, *.mpg)|*.avi;*.mpg;*.wmv|Alle Dateien|*.*";
dlg.Multiselect = true;
if (dlg.ShowDialog().Value == true)
{
if (dlg.FileNames.Count() == 0)
{
return;
}
foreach (string filename in dlg.FileNames)
{
_FileInfo NewFile = new _FileInfo {
FullName = filename
};
_fileList.Items.Add(NewFile);
b = false;
_SelectedFilePath = NewFile.FullName;
this.Title = NewFile.ToString();
}
Func();
b = true;
}
}
public async Task WriteAllTextAsync(string path, string text) =>
await Task.Run(() =>
{
var dirPath = Path.GetDirectoryName(path) ?? "";
var fileName = Path.GetFileName(path) ?? "";
var dir = FindDir(dirPath);
lock (dir)
{
if (dir.Files.ContainsKey(fileName))
{
var fileInfo = dir.Files[fileName];
lock (fileInfo) {
fileInfo.Content = text;
fileInfo.LastWriteTimeUtc = TimeStampSource.GetTimeStamp();
}
}
else
{
var timeStamp = TimeStampSource.GetTimeStamp();
var fileInfo = new _FileInfo
{
Path = path,
CreationTimeUtc = timeStamp,
LastWriteTimeUtc = timeStamp,
Content = text
};
dir.Files[fileName] = fileInfo;
}
}
});
private void _fileList_SelectionChanged(object sender, SelectionChangedEventArgs e)
{
if (b)
{
_FileInfo NewFile = _fileList.SelectedValue as _FileInfo;
_SelectedFilePath = NewFile.FullName;
Func();
this.Title = NewFile.ToString();
}
}
private void Window_Drop(object sender, DragEventArgs e)
{
string[] files = e.Data.GetData(DataFormats.FileDrop) as string[];
if (files == null)
{
return;
}
foreach (string filename in files)
{
_FileInfo NewFile = new _FileInfo {
FullName = filename
};
_fileList.Items.Add(NewFile);
b = false;
_SelectedFilePath = NewFile.FullName;
this.Title = NewFile.ToString();
}
Func();
b = true;
}
//read from pParse.para
void pParse_Inter.pParse_read(string task_path, ref _Task _task)
{
string strLine = "";
try
{
pTop.classes.File _file = _task.T_File;
FileStream fst = new FileStream(task_path + "\\param\\pParseTD.cfg", FileMode.Open);
StreamReader sr = new StreamReader(fst, Encoding.Default);
strLine = sr.ReadLine();
string subtitle = "";
ObservableCollection <_FileInfo> dfl = new ObservableCollection <_FileInfo>();
#region
while (strLine != null)
{
strLine = strLine.Trim();
if (strLine.Length > 0 && strLine.StartsWith("#"))
{
}
else if (strLine.Length > 0 && strLine[0] == '[' && strLine[strLine.Length - 1] == ']')
{
subtitle = strLine;
}
else if (strLine.Length > 0 && strLine.LastIndexOf("=") > -1)
{
if (subtitle.Equals("[Basic Options]"))
{
if (strLine.Length > 7 && strLine.Substring(0, 7).Equals("datanum"))
{
//if new a task, then dtnum=0
int dtnum = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
for (int i = 0; i < dtnum; i++)
{
strLine = sr.ReadLine();
strLine = strLine.Substring(strLine.LastIndexOf("=") + 1);
if (System.IO.File.Exists(@strLine))
{
_FileInfo _fi = new _FileInfo(strLine);
dfl.Add(_fi);
}
else
{
System.Windows.MessageBox.Show("\"" + strLine + "\" does not exist.");
}
}
}
else if (strLine.Length > 12 && strLine.Substring(0, 12).Equals("input_format"))
{
_file.File_format = strLine.Substring(strLine.LastIndexOf("=") + 1);
if (_file.File_format.Equals("raw")) //raw
{
_file.File_format_index = (int)FormatOptions.RAW; //format改变会引起Data_file_list的清空
}
else if (_file.File_format.Equals("mgf"))
{
_file.File_format_index = (int)FormatOptions.MGF;
}
_file.Data_file_list.Clear();
for (int i = 0; i < dfl.Count; i++)
{
_file.Data_file_list.Add(dfl[i]);
}
}
}
#region
else if (subtitle.Equals("[Advanced Options]"))
{
if (strLine.Length > ("max_charge").Length && strLine.Substring(0, ("max_charge").Length).Equals("max_charge"))
{
_file.Pparse_advanced.Max_charge = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
else if (strLine.Length > ("max_mass").Length && strLine.Substring(0, ("max_mass").Length).Equals("max_mass"))
{
_file.Pparse_advanced.Max_mass = double.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
else if (strLine.Length > ("SN_threshold").Length && strLine.Substring(0, ("SN_threshold").Length).Equals("SN_threshold"))
{
_file.Pparse_advanced.Sn_ratio = double.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
else if (strLine.Length > ("mz_error_tolerance").Length && strLine.Substring(0, ("mz_error_tolerance").Length).Equals("mz_error_tolerance"))
{
_file.Pparse_advanced.Mz_tolerance = double.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
else if (strLine.Length > 8 && strLine.Substring(0, 8).Equals("co-elute"))
{
if (strLine.Substring(strLine.LastIndexOf("=") + 1).Equals("1"))
{
_file.Pparse_advanced.Mix_spectra = true;
}
else
{
_file.Pparse_advanced.Mix_spectra = false;
}
}
else if (strLine.Length > 15 && strLine.Substring(0, 15).Equals("isolation_width"))
{
_file.Pparse_advanced.Isolation_width = double.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
else if (strLine.Length > ("model_type").Length && strLine.Substring(0, ("model_type").Length).Equals("model_type"))
{
_file.Pparse_advanced.Model = strLine.Substring(strLine.LastIndexOf("=") + 1).Trim().ToLower().Equals("svm") ? (int)ModelOptions.SVM : (int)ModelOptions.MARS;
}
else if (strLine.Length > 14 && strLine.Substring(0, 14).Equals("mars_threshold"))
{
_file.Pparse_advanced.Threshold = double.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
}
#endregion
else if (subtitle.Equals("[About pXtract]"))
{
if (strLine.Length > 3 && strLine.Substring(0, 3).Equals("m/z"))
{
_file.Pparse_advanced.Mz_decimal = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
_file.Pparse_advanced.Mz_decimal_index = _file.Pparse_advanced.Mz_decimal - 1;
}
else if (strLine.Length > 9 && (strLine.Substring(0, 9).Equals("intensity") || strLine.Substring(0, 9).Equals("Intensity")))
{
_file.Pparse_advanced.Intensity_decimal = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
_file.Pparse_advanced.Intensity_decimal_index = _file.Pparse_advanced.Intensity_decimal - 1;
}
}
}
strLine = sr.ReadLine();
}
sr.Close();
fst.Close();
#endregion
}
catch (Exception exe)
{
throw new Exception("[pParseTD_read] line: " + strLine + "\n" + exe.Message);
}
}
//read from pParse.para
void pParse_Inter.readpParse_para(string task_path, ref _Task _task)
{
try
{
File _file = _task.T_File;
FileStream fst = new FileStream(task_path + "\\param\\pParse.cfg", FileMode.Open);
StreamReader sr = new StreamReader(fst, Encoding.Default);
string strLine = sr.ReadLine();
string subtitle = "";
ObservableCollection <_FileInfo> dfl = new ObservableCollection <_FileInfo>();
#region
while (strLine != null)
{
strLine = strLine.Trim();
if (strLine.Length > 0 && strLine.StartsWith("#"))
{
}
else if (strLine.Length > 0 && strLine[0] == '[' && strLine[strLine.Length - 1] == ']')
{
subtitle = strLine;
}
else
{
if (subtitle.Equals("[Basic Options]"))
{
if (strLine.Length > 7 && strLine.Substring(0, 7).Equals("datanum"))
{
//if new a task, then dtnum=0
int dtnum = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
for (int i = 0; i < dtnum; i++)
{
strLine = sr.ReadLine();
strLine = strLine.Substring(strLine.LastIndexOf("=") + 1);
if (System.IO.File.Exists(@strLine))
{
_FileInfo _fi = new _FileInfo(strLine);
dfl.Add(_fi);
}
else
{
System.Windows.MessageBox.Show("\"" + strLine + "\" does not exist.");
}
}
}
}
#region
else if (subtitle.Equals("[Advanced Options]"))
{
if (strLine.Length > 8 && strLine.Substring(0, 8).Equals("co-elute"))
{
if (strLine.Substring(strLine.LastIndexOf("=") + 1).Equals("1"))
{
_file.Mix_spectra = true;
}
else
{
_file.Mix_spectra = false;
}
}
else if (strLine.Length > 12 && strLine.Substring(0, 12).Equals("input_format"))
{
_file.File_format = strLine.Substring(strLine.LastIndexOf("=") + 1);
if (_file.File_format.Equals("raw")) //raw
{
_file.File_format_index = (int)FormatOptions.RAW; //format改变会引起Data_file_list的清空
}
else if (_file.File_format.Equals("mgf"))
{
_file.File_format_index = (int)FormatOptions.MGF;
}
else if (_file.File_format.Equals("wiff"))
{
_file.File_format_index = (int)FormatOptions.WIFF;
}
_file.Data_file_list.Clear();
for (int i = 0; i < dfl.Count; i++)
{
_file.Data_file_list.Add(dfl[i]);
}
}
else if (strLine.Length > 15 && strLine.Substring(0, 15).Equals("isolation_width"))
{
_file.Pparse_advanced.Isolation_width = double.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
else if (strLine.Length > 14 && strLine.Substring(0, 14).Equals("mars_threshold"))
{
_file.Threshold = double.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1).Trim());
}
else if (strLine.Length > 8 && strLine.Substring(0, 8).Equals("ipv_file"))
{
_file.Pparse_advanced.Ipv_file = strLine.Substring(strLine.LastIndexOf("=") + 1).Trim();
}
else if (strLine.Length > 11 && strLine.Substring(0, 11).Equals("trainingset"))
{
_file.Pparse_advanced.Trainingset = strLine.Substring(strLine.LastIndexOf("=") + 1).Trim();
}
}
#endregion
#region
else if (subtitle.Equals("[Internal Switches]"))
{
if (strLine.Length > 13 && strLine.Substring(0, 13).Equals("output_mars_y"))
{
_file.Pparse_advanced.Output_mars_y = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > 10 && strLine.Substring(0, 10).Equals("delete_msn"))
{
_file.Pparse_advanced.Output_msn = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1)) == 0 ? 1 : 0;
}
else if (strLine.Length > 10 && strLine.Substring(0, 10).Equals("output_mgf"))
{
_file.Pparse_advanced.Output_mgf = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > 9 && strLine.Substring(0, 9).Equals("output_pf"))
{
_file.Pparse_advanced.Output_pf = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > 10 && strLine.Substring(0, 10).Equals("debug_mode"))
{
_file.Pparse_advanced.Debug_mode = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > ("check_activationcenter").Length && strLine.Substring(0, ("check_activationcenter").Length).Equals("check_activationcenter"))
{
_file.Pparse_advanced.Check_activationcenter = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > ("output_all_mars_y").Length && strLine.Substring(0, ("output_all_mars_y").Length).Equals("output_all_mars_y"))
{
_file.Pparse_advanced.Output_all_mars_y = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > 13 && strLine.Substring(0, 13).Equals("rewrite_files"))
{
_file.Pparse_advanced.Rewrite_files = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > ("export_unchecked_mono").Length && strLine.Substring(0, ("export_unchecked_mono").Length).Equals("export_unchecked_mono"))
{
_file.Pparse_advanced.Export_unchecked_mono = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > ("cut_similiar_mono").Length && strLine.Substring(0, ("cut_similiar_mono").Length).Equals("cut_similiar_mono"))
{
_file.Pparse_advanced.Cut_similiar_mono = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
else if (strLine.Length > 10 && strLine.Substring(0, 10).Equals("mars_model"))
{
_file.Model = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
_file.ModelIndex = ConfigHelper.mars_model.IndexOf(_file.Model);
//if the value is invalid
if (_file.ModelIndex == -1)
{
_file.ModelIndex = 0;
_file.Model = ConfigHelper.mars_model[_file.ModelIndex];
}
}
else if (strLine.Length > ("output_trainingdata").Length && strLine.Substring(0, ("output_trainingdata").Length).Equals("output_trainingdata"))
{
_file.Pparse_advanced.Output_trainingdata = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
}
}
#endregion
else if (subtitle.Equals("[About pXtract]"))
{
if (strLine.Length > 3 && strLine.Substring(0, 3).Equals("m/z"))
{
_file.Mz_decimal = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
_file.Mz_decimal_index = _file.Mz_decimal - 1;
}
else if (strLine.Length > 9 && (strLine.Substring(0, 9).Equals("intensity") || strLine.Substring(0, 9).Equals("Intensity")))
{
_file.Intensity_decimal = int.Parse(strLine.Substring(strLine.LastIndexOf("=") + 1));
_file.Intensity_decimal_index = _file.Intensity_decimal - 1;
}
}
}
strLine = sr.ReadLine();
}
sr.Close();
fst.Close();
#endregion
}
catch (Exception exe)
{
throw new Exception(exe.Message);
}
}
