public async Task ViterbiGCPatchTenRuns()
{
var gcPatchParameters = new GCPatchParameters();
SequenceMetadata item1 = await
FastALookupCient.LookupByAccessionIdAsync("GCF_000091665.1_ASM9166v1_genomic");
var viterbigcPatch = new ViterbiImpl(gcPatchParameters, input: item1.Sequence);
List <ViterbiResult> results = viterbigcPatch.ExecuteViterbiAndTrain(executionCount: 10);
for (int i = 0; i < 9; i++)
{
Console.WriteLine("Iteration {0}", i + 1);
Console.WriteLine("---------------------------------------------------------------------------");
Console.WriteLine(results[i].PrettyPrint(interestedStateIndex: 1, numberOfHits: 5));
}
Console.WriteLine("Iteration {0}", 10);
Console.WriteLine("---------------------------------------------------------------------------");
Console.WriteLine(results[9].PrettyPrintAllHits(interestedStateIndex: 1));
Assert.IsNotNull(results);
}
public async Task ViterbiDiceRollTenRuns()
{
var diceRollParams = new DiceRollParameters();
SequenceMetadata item1 = await
FastALookupCient.LookupByAccessionIdAsync("DiceRoll");
var viterbiDiceRoll = new ViterbiImpl(diceRollParams, input: item1.Sequence);
List <ViterbiResult> results = viterbiDiceRoll.ExecuteViterbiAndTrain(executionCount: 10);
for (int i = 0; i < 9; i++)
{
Console.WriteLine("Iteration {0}", i + 1);
Console.WriteLine("---------------------------------------------------------------------------");
Console.WriteLine(results[i].PrettyPrint(interestedStateIndex: 1, numberOfHits: 5));
Console.WriteLine(results[i].StateTransitionRepresentaton);
}
Console.WriteLine("Iteration {0}", 10);
Console.WriteLine("---------------------------------------------------------------------------");
Console.WriteLine(results[9].PrettyPrintAllHits(interestedStateIndex: 1));
Console.WriteLine(results[9].StateTransitionRepresentaton);
Assert.IsNotNull(results);
}
