public void TestDeserialization()
{
var expectedVerifier = new VerifierBenchmark()
{
Loader = new Svc2004Loader(@"Databases\Online\SVC2004\Task2.zip".GetPath(), true),
Verifier = new Verifier()
{
Pipeline = new SequentialTransformPipeline
{
new NormalizeRotation()
{
InputX = Features.X, InputY = Features.Y, InputT = Features.T, OutputX = Features.X, OutputY = Features.Y
},
new Scale()
{
InputFeature = Features.X, OutputFeature = Features.X
},
new Scale()
{
InputFeature = Features.Y, OutputFeature = Features.Y
},
new FillPenUpDurations()
{
InputFeatures = new List <FeatureDescriptor <List <double> > >()
{
Features.X, Features.Y, Features.Pressure
},
OutputFeatures = new List <FeatureDescriptor <List <double> > >()
{
Features.X, Features.Y, Features.Pressure
},
InterpolationType = typeof(CubicInterpolation),
TimeInputFeature = Features.T,
TimeOutputFeature = Features.T
}
}
,
Classifier = new OptimalDtwClassifier()
{
Sampler = new FirstNSampler(10),
Features = new List <FeatureDescriptor>()
{
Features.X, Features.Y, Features.Pressure
}
}
},
Sampler = new FirstNSampler(10),
Logger = new SimpleConsoleLogger(),
};
var verifierJson = SerializationHelper.JsonSerialize(expectedVerifier);
var deserializedVerifier = SerializationHelper.Deserialize <VerifierBenchmark>(verifierJson);
JsonAssert.AreEqual(expectedVerifier, deserializedVerifier);
}
private void TestClassifier()
{
ProgressValue = 0;
App.Current.Dispatcher.Invoke(delegate
{
StatisticsProgressBar.Visibility = Visibility.Visible;
});
var logger = new Logger(LogLevel.Debug, null, Log);
var benchmarkResults = new Dictionary <List <FeatureDescriptor>, BenchmarkResults>(Common.Configuration.TestInputFeatures.Length);
string transformPipelineElementsNames = "";
foreach (var featureFilter in Common.Configuration.TestInputFeatures)
{
IClassifier classifier = GetClassifier(featureFilter);
transformPipelineElementsNames = "";
var transformPipeline = new SequentialTransformPipeline()
{
new DerivedSvc2004FeatureExtractor()
};
if (IsNormalizationSelected)
{
transformPipeline.Add(new Svc2004Normalize()); transformPipelineElementsNames += "_Norm";
}
if (IsCentroidSelected)
{
transformPipeline.Add(new CentroidTranslate()); transformPipelineElementsNames += "_Centroid";
}
if (IsCenteringSelected)
{
transformPipeline.Add(new CenteringTransform()); transformPipelineElementsNames += "_Centering";
}
benchmark = new VerifierBenchmark()
{
//Loader = new Svc2004Loader(@"..\..\..\SigStat.Sample\Databases\Online\SVC2004\Task2.zip", true, s => s.ID.CompareTo("05") < 0),
//Loader = new Svc2004Loader(@"..\..\..\SigStat.Sample\Databases\Online\SVC2004\Task2.zip", true, s => s.ID == "02"),
Loader = new Svc2004Loader(@"..\..\..\SigStat.Sample\Databases\Online\SVC2004\Task2.zip", true),
Sampler = IsOptiClass ? MySampler.AllReferences : MySampler.Basic,
Verifier = new MyVerifier(classifier)
{
TransformPipeline = transformPipeline
},
Logger = logger,
};
benchmark.ProgressChanged += Bm_ProgressChanged;
benchmarkResults.Add(featureFilter, benchmark.Execute());
string dumpFileName = DateTime.Now.ToString().Replace(':', '.') + "_" + classifier.Name + transformPipelineElementsNames + "_Dump.xlsx";
DumpLog(dumpFileName, logger.ObjectEntries);
Process.Start(dumpFileName);
}
//string classifierName = ((MyVerifier)benchmark.Verifier).Classifier.GetType().Name;
string fileName = DateTime.Now.ToString().Replace(':', '.') + "_" + GetClassifier(Common.Configuration.DefaultInputFeatures).Name + transformPipelineElementsNames + ".xlsx";
using (var package = new ExcelPackage(new FileInfo(fileName)))
{
foreach (var featureFilter in Common.Configuration.TestInputFeatures)
{
string wsName = "";
foreach (var feature in featureFilter)
{
wsName += feature.Name;
}
ExcelWorksheet ws = ExcelHelper.GetWorkSheetFromPackage(package, wsName);
ExcelHelper.SetBenchmarkresultOfClassificationHeader(ws);
var results = benchmarkResults[featureFilter];
foreach (var result in results.SignerResults)
{
ExcelHelper.SetBenchmarkresultOfClassificationRow(ws, result);
}
ExcelHelper.SetBenchmarkresultOfClassificationSummaryRow(ws, results.FinalResult, results.SignerResults.Count + 2);
package.Save();
}
}
Process.Start(fileName);
}
internal static async Task RunAsync(string inputDir, string outputDir, int procId, int maxThreads)
{
//stop worker process after 3 days
DateTime stopTime = DateTime.Now.AddHours(71);
//delayed start
await Task.Delay(100 *procId);
OutputDirectory = Directory.CreateDirectory(outputDir);
var initSuccess = await Init(inputDir);
if (!initSuccess)
{
return;
}
Console.WriteLine($"{DateTime.Now}: Worker is running.");
if (!Console.IsInputRedirected)
{
Console.WriteLine("Press 'A' to abort.");
}
while (DateTime.Now < stopTime)
{
StringBuilder debugInfo = new StringBuilder();
debugInfo.AppendLine(DateTime.Now.ToString());
if (!Console.IsInputRedirected)
{
if (Console.KeyAvailable && Console.ReadKey().Key == ConsoleKey.A)
{
Console.WriteLine($"{DateTime.Now}: Aborting...");
return;
}
}
var logger = new SimpleConsoleLogger();//default log level: Information
logger.Logged += (m, e, l) =>
{
debugInfo.AppendLine(m);
if (e != null)
{
debugInfo.AppendLine(e.ToString());
}
if (l == LogLevel.Error || l == LogLevel.Critical)
{
CurrentResultType = "Error";
}
};
CurrentBenchmark = await GetNextBenchmark();
if (CurrentBenchmark is null)
{
return;
}
CurrentBenchmark.Logger = logger;
Console.WriteLine($"{DateTime.Now}: Starting benchmark...");
try
{
if (maxThreads > 0)
{
CurrentResults = CurrentBenchmark.Execute(maxThreads);
}
else
{
CurrentResults = CurrentBenchmark.Execute(true);//default: no restriction
}
CurrentResultType = "Success";
}
catch (Exception exc)
{
CurrentResultType = "Error";
Console.WriteLine(exc.ToString());
debugInfo.AppendLine(exc.ToString());
var debugFileName = $"Result_{CurrentBenchmarkId}_Log.txt";
debugFileName = Path.Combine(OutputDirectory.ToString(), debugFileName);
File.WriteAllText(debugFileName, debugInfo.ToString());
if (!Program.Offline)
{
var blob = Container.GetBlockBlobReference($"Results/{debugFileName}");
await blob.DeleteIfExistsAsync();
await blob.UploadFromFileAsync(debugFileName);
}
continue;
}
await ProcessResults();
if (Program.Offline)
{//delete input config and lock after processing
File.Delete(Path.Combine(InputDirectory.ToString(), CurrentBenchmarkId + ".json"));
File.Delete(Path.Combine(InputDirectory.ToString(), CurrentBenchmarkId + ".json.lock"));
}
else
{
await Queue.DeleteMessageAsync(CurrentMessage);
}
//LogProcessor.Dump(logger);
// MongoDB
// TableStorage
// Json => utólag, json-ben szűrni lehet
// DynamoDB ==> MongoDB $$$$$$$
// DateTime, MachineName, ....ExecutionTime,..., ResultType, Result json{40*60 táblázat}
//benchmark.Dump(filename, config.ToKeyValuePairs());
}
}
//static LinearInterpolation linearInterpolation = new LinearInterpolation();
//static CubicInterpolation cubicInterpolation = new CubicInterpolation();
//TODO: legyen allapotmentes a maradek is?
public static VerifierBenchmark Build(BenchmarkConfig config, string databasePath = null)
{
if (databasePath == null)
{
databasePath = Environment.GetEnvironmentVariable("SigStatDB");
}
svcLoader = new Svc2004Loader(Path.Combine(databasePath, "SVC2004.zip"), true);
mcytLoader = new MCYTLoader(Path.Combine(databasePath, "MCYT100.zip"), true);
dutchLoader = new SigComp11DutchLoader(Path.Combine(databasePath, "SigComp11_Dutch.zip"), true);
chineseLoader = new SigComp11ChineseLoader(Path.Combine(databasePath, "SigComp11Chinese.zip"), true);
germanLoader = new SigComp15GermanLoader(Path.Combine(databasePath, "SigWiComp2015_German.zip"), true);
japaneseLoader = new SigComp13JapaneseLoader(Path.Combine(databasePath, "SigWiComp2013_Japanese.zip"), true);
//labor:
//svcLoader = new Svc2004Loader(@"Task2.zip", true);
//mcytLoader = new MCYTLoader(@"MCYT_Signature_100.zip", true);
//dutchLoader = new SigComp11DutchLoader(@"dutch_renamed.zip", true);
Sampler sampler1 = null;
Sampler sampler2 = null;
Sampler sampler3 = null;
Sampler sampler4 = null;
VerifierBenchmark b = new VerifierBenchmark();
switch (config.Database)
{
case "SVC2004":
b.Loader = svcLoader;
sampler1 = first10Sampler;
sampler2 = last10Sampler;
sampler3 = even10Sampler;
sampler4 = odd10Sampler;
break;
case "MCYT100":
b.Loader = mcytLoader;
sampler1 = first10Sampler;
sampler2 = last10Sampler;
sampler3 = even10Sampler;
sampler4 = odd10Sampler;
break;
case "DUTCH":
b.Loader = dutchLoader;
sampler1 = first10Sampler;
sampler2 = last10Sampler;
sampler3 = even10Sampler;
sampler4 = odd10Sampler;
break;
case "GERMAN":
b.Loader = germanLoader;
sampler1 = first10Sampler;
sampler2 = last10Sampler;
sampler3 = even10Sampler;
sampler4 = odd10Sampler;
break;
case "CHINESE":
b.Loader = chineseLoader;
sampler1 = first10Sampler;
sampler2 = last10Sampler;
sampler3 = even10Sampler;
sampler4 = odd10Sampler;
break;
case "JAPANESE":
b.Loader = japaneseLoader;
sampler1 = first10Sampler;
sampler2 = last10Sampler;
sampler3 = even10Sampler;
sampler4 = odd10Sampler;
break;
default:
throw new NotSupportedException();
}
switch (config.Sampling)
{
case "S1":
b.Sampler = sampler1;
break;
case "S2":
b.Sampler = sampler2;
break;
case "S3":
b.Sampler = sampler3;
break;
case "S4":
b.Sampler = sampler4;
break;
default:
break;
}
var pipeline = new SequentialTransformPipeline();
//Filter first
switch (config.ResamplingType_Filter)
{
case "P":
case "P_FillPenUp":
pipeline.Add(filterPoints);
break;
case "None":
default:
break;
}
if (config.Rotation)
{
pipeline.Add(normalizeRotation);
}
switch (config.Translation_Scaling.Translation)
{
case "CogToOriginX":
pipeline.Add(cxTranslate);
break;
case "CogToOriginY":
pipeline.Add(cyTranslate);
break;
case "CogToOriginXY":
pipeline.Add(cxTranslate);
pipeline.Add(cyTranslate);
break;
case "BottomLeftToOrigin":
pipeline.Add(blxTranslate);
pipeline.Add(blyTranslate);
break;
case "None":
default:
break;
}
switch (config.Translation_Scaling.Scaling)
{
case "X01":
pipeline.Add(xScale);
if (config.Features.Contains("P"))
{
pipeline.Add(pScale);
}
break;
case "Y01":
pipeline.Add(yScale);
if (config.Features.Contains("P"))
{
pipeline.Add(pScale);
}
break;
case "P01":
pipeline.Add(pScale);
break;
case "X01Y01":
pipeline.Add(xScale);
pipeline.Add(yScale);
pipeline.Add(pScale);
break;
case "X01Y0prop":
pipeline.Add(xyUniformScale);
if (config.Features.Contains("P"))
{
pipeline.Add(pScale);
}
break;
case "Y01X0prop":
pipeline.Add(yxUniformScale);
if (config.Features.Contains("P"))
{
pipeline.Add(pScale);
}
break;
case "None":
if (config.Features.Contains("P"))
{
pipeline.Add(pRelativeScale);
}
break;
default:
break;
}
Type ip;
switch (config.Interpolation)
{
case "Cubic":
ip = typeof(CubicInterpolation);
break;
case "Linear":
default:
ip = typeof(LinearInterpolation);
break;
}
var featurelist = new List <FeatureDescriptor <List <double> > >()
{
Features.X, Features.Y, Features.Pressure, Features.Azimuth, Features.Altitude
};
//resample after transformations
switch (config.ResamplingType_Filter)
{
case "SampleCount":
pipeline.Add(new ResampleSamplesCountBased()
{
InputFeatures = featurelist,
OutputFeatures = featurelist,
OriginalTFeature = Features.T,
ResampledTFeature = Features.T,
NumOfSamples = (int)config.ResamplingParam,
InterpolationType = ip
});
break;
case "P_FillPenUp":
case "FillPenUp":
pipeline.Add(new FillPenUpDurations()
{
InputFeatures = featurelist,
OutputFeatures = featurelist,
TimeInputFeature = Features.T,
TimeOutputFeature = Features.T,
InterpolationType = ip
});
break;
case "None":
default:
break;
}
var ClassifierFeatures = new List <FeatureDescriptor>();
switch (config.Features)
{
case "X":
ClassifierFeatures.Add(Features.X);
break;
case "XP":
ClassifierFeatures.Add(Features.X);
ClassifierFeatures.Add(Features.Pressure);
break;
case "Y":
ClassifierFeatures.Add(Features.Y);
break;
case "YP":
ClassifierFeatures.Add(Features.Y);
ClassifierFeatures.Add(Features.Pressure);
break;
case "P":
ClassifierFeatures.Add(Features.Pressure);
break;
case "Azimuth":
ClassifierFeatures.Add(Features.Azimuth);
break;
case "Altitude":
ClassifierFeatures.Add(Features.Altitude);
break;
case "XY":
ClassifierFeatures.Add(Features.X);
ClassifierFeatures.Add(Features.Y);
break;
case "XYP":
ClassifierFeatures.Add(Features.X);
ClassifierFeatures.Add(Features.Y);
ClassifierFeatures.Add(Features.Pressure);
break;
case "XYPAzimuthAltitude":
ClassifierFeatures.Add(Features.X);
ClassifierFeatures.Add(Features.Y);
ClassifierFeatures.Add(Features.Pressure);
ClassifierFeatures.Add(Features.Azimuth);
ClassifierFeatures.Add(Features.Altitude);
break;
default:
break;
}
Func <double[], double[], double> distance = null;
switch (config.Distance)
{
case "Euclidean":
distance = Accord.Math.Distance.Euclidean;
break;
case "Manhattan":
distance = Accord.Math.Distance.Manhattan;
break;
default:
break;
}
IClassifier classifier;
if (config.Classifier == "Dtw")
{
classifier = new DtwClassifier(distance);
(classifier as DtwClassifier).Features = ClassifierFeatures;
}
else if (config.Classifier == "OptimalDtw")
{
classifier = new OptimalDtwClassifier(distance)
{
Features = ClassifierFeatures,
Sampler = b.Sampler
};
}
else
{
throw new NotSupportedException();
}
b.Verifier = new Model.Verifier()
{
Pipeline = pipeline,
Classifier = classifier
};
b.Parameters = config.ToKeyValuePairs().ToList();
return(b);
}
