public void testIsContextValid()
{
TnmStagingData data = new TnmStagingData();
data.setInput(TNMStagingCSharp.Src.Staging.Staging.CTX_YEAR_CURRENT, "2016");
// test valid year
data.setInput(TnmInput.DX_YEAR, "2016");
Assert.IsTrue(_STAGING.isContextValid("urethra", StagingData.YEAR_DX_KEY, data.getInput()));
// test invalid year
data.setInput(TnmInput.DX_YEAR, "2014");
Assert.IsFalse(_STAGING.isContextValid("urethra", StagingData.YEAR_DX_KEY, data.getInput()));
}
public void testInputBuilder()
{
TnmStagingData data1 = new TnmStagingData();
data1.setInput(TnmInput.PRIMARY_SITE, "C680");
data1.setInput(TnmInput.HISTOLOGY, "8000");
data1.setInput(TnmInput.BEHAVIOR, "3");
data1.setInput(TnmInput.GRADE, "9");
data1.setInput(TnmInput.DX_YEAR, "2013");
data1.setInput(TnmInput.REGIONAL_NODES_POSITIVE, "99");
data1.setInput(TnmInput.AGE_AT_DX, "060");
data1.setInput(TnmInput.SEX, "1");
data1.setInput(TnmInput.RX_SUMM_SURGERY, "8");
data1.setInput(TnmInput.RX_SUMM_RADIATION, "9");
data1.setInput(TnmInput.CLIN_T, "1");
data1.setInput(TnmInput.CLIN_N, "2");
data1.setInput(TnmInput.CLIN_M, "3");
data1.setInput(TnmInput.PATH_T, "4");
data1.setInput(TnmInput.PATH_N, "5");
data1.setInput(TnmInput.PATH_M, "6");
data1.setSsf(1, "020");
TnmStagingData data2 = new TnmStagingData.TnmStagingInputBuilder()
.withInput(TnmInput.PRIMARY_SITE, "C680")
.withInput(TnmInput.HISTOLOGY, "8000")
.withInput(TnmInput.BEHAVIOR, "3")
.withInput(TnmInput.GRADE, "9")
.withInput(TnmInput.DX_YEAR, "2013")
.withInput(TnmInput.REGIONAL_NODES_POSITIVE, "99")
.withInput(TnmInput.AGE_AT_DX, "060")
.withInput(TnmInput.SEX, "1")
.withInput(TnmInput.RX_SUMM_SURGERY, "8")
.withInput(TnmInput.RX_SUMM_RADIATION, "9")
.withInput(TnmInput.CLIN_T, "1")
.withInput(TnmInput.CLIN_N, "2")
.withInput(TnmInput.CLIN_M, "3")
.withInput(TnmInput.PATH_T, "4")
.withInput(TnmInput.PATH_N, "5")
.withInput(TnmInput.PATH_M, "6")
.withSsf(1, "020").build();
Assert.IsTrue(TNMStaging_UnitTestApp.Src.Staging.ComparisonUtils.CompareStringDictionaries(data1.getInput(), data2.getInput()));
}
public void testStageUrethra()
{
TnmStagingData data = new TnmStagingData();
data.setInput(TnmInput.PRIMARY_SITE, "C680");
data.setInput(TnmInput.HISTOLOGY, "8000");
data.setInput(TnmInput.BEHAVIOR, "3");
data.setInput(TnmInput.DX_YEAR, "2016");
data.setInput(TnmInput.RX_SUMM_SURGERY, "2");
data.setInput(TnmInput.RX_SUMM_RADIATION, "4");
data.setInput(TnmInput.REGIONAL_NODES_POSITIVE, "02");
data.setInput(TnmInput.CLIN_T, "c0");
data.setInput(TnmInput.CLIN_N, "c1");
data.setInput(TnmInput.CLIN_M, "c0");
data.setInput(TnmInput.PATH_T, "p0");
data.setInput(TnmInput.PATH_N, "p1");
data.setInput(TnmInput.PATH_M, "p1");
// perform the staging
_STAGING.stage(data);
Assert.AreEqual(StagingData.Result.STAGED, data.getResult());
Assert.AreEqual("urethra", data.getSchemaId());
Assert.AreEqual(0, data.getErrors().Count);
Assert.AreEqual(25, data.getPath().Count);
Assert.AreEqual(10, data.getOutput().Count);
// check outputs
Assert.AreEqual(TnmVersion.LATEST.getVersion(), data.getOutput(TnmOutput.DERIVED_VERSION));
Assert.AreEqual("3", data.getOutput(TnmOutput.CLIN_STAGE_GROUP));
Assert.AreEqual("4", data.getOutput(TnmOutput.PATH_STAGE_GROUP));
Assert.AreEqual("4", data.getOutput(TnmOutput.COMBINED_STAGE_GROUP));
Assert.AreEqual("c0", data.getOutput(TnmOutput.COMBINED_T));
Assert.AreEqual("1", data.getOutput(TnmOutput.SOURCE_T));
Assert.AreEqual("c1", data.getOutput(TnmOutput.COMBINED_N));
Assert.AreEqual("1", data.getOutput(TnmOutput.SOURCE_N));
Assert.AreEqual("p1", data.getOutput(TnmOutput.COMBINED_M));
Assert.AreEqual("2", data.getOutput(TnmOutput.SOURCE_M));
}
public void testBadLookupInStage()
{
TnmStagingData data = new TnmStagingData();
// if site/hist are not supplied, no lookup
_STAGING.stage(data);
Assert.AreEqual(StagingData.Result.FAILED_MISSING_SITE_OR_HISTOLOGY, data.getResult());
// add hist only and it should fail with same result
data.setInput(TnmInput.PRIMARY_SITE, "C489");
_STAGING.stage(data);
Assert.AreEqual(StagingData.Result.FAILED_MISSING_SITE_OR_HISTOLOGY, data.getResult());
// put a site/hist combo that doesn't match a schema
data.setInput(TnmInput.HISTOLOGY, "9898");
_STAGING.stage(data);
Assert.AreEqual(StagingData.Result.FAILED_NO_MATCHING_SCHEMA, data.getResult());
// now a site/hist that returns multiple results
data.setInput(TnmInput.PRIMARY_SITE, "C111");
data.setInput(TnmInput.HISTOLOGY, "8200");
_STAGING.stage(data);
Assert.AreEqual(StagingData.Result.FAILED_MULITPLE_MATCHING_SCHEMAS, data.getResult());
}
public static void MultiTask_TaskCompute(int id, Object task_data)
{
MultiTask_DataObj thisDataObj = (MultiTask_DataObj)task_data;
try
{
// load up inputs
TnmStagingData data = new TnmStagingData();
foreach (KeyValuePair <TnmInput, String> kp in thisDataObj.mInputValues)
{
data.setInput(kp.Key, kp.Value);
}
// save the expected outputs
Dictionary <String, String> output = new Dictionary <String, String>(100, StringComparer.Ordinal);
String sKeyValue = "";
foreach (KeyValuePair <TnmOutput, String> entry in thisDataObj.mOutputValues)
{
sKeyValue = entry.Key.toString();
output[sKeyValue] = entry.Value;
}
// run collaborative stage; if no schema found, set the output to empty
SchemaLookup lookup = new SchemaLookup(data.getInput(TnmInput.PRIMARY_SITE), data.getInput(TnmInput.HISTOLOGY));
lookup.setInput(TnmStagingData.SEX_KEY, data.getInput(TnmInput.SEX));
lookup.setInput(TnmStagingData.SSF25_KEY, data.getInput(TnmInput.SSF25));
List <StagingSchema> schemas = mMultiTask_Staging.lookupSchema(lookup);
if (schemas.Count == 1)
{
mMultiTask_Staging.stage(data);
}
else
{
Dictionary <String, String> outResult = new Dictionary <String, String>(2, StringComparer.Ordinal);
outResult["schema_id"] = "<invalid>";
data.setOutput(outResult);
}
List <String> mismatches = new List <String>();
// compare results
if (!thisDataObj.mbJSONFormat)
{
String sNewResultStr = "";
String sOldResultStr = thisDataObj.msExpectedResult.Trim();
if (data.getResult() == StagingData.Result.STAGED)
{
sNewResultStr = "STAGED";
}
else if (data.getResult() == StagingData.Result.FAILED_MISSING_SITE_OR_HISTOLOGY)
{
sNewResultStr = "FAILED_MISSING_SITE_OR_HISTOLOGY";
}
else if (data.getResult() == StagingData.Result.FAILED_NO_MATCHING_SCHEMA)
{
sNewResultStr = "FAILED_NO_MATCHING_SCHEMA";
}
else if (data.getResult() == StagingData.Result.FAILED_MULITPLE_MATCHING_SCHEMAS)
{
sNewResultStr = "FAILED_MULITPLE_MATCHING_SCHEMAS";
}
else if (data.getResult() == StagingData.Result.FAILED_INVALID_YEAR_DX)
{
sNewResultStr = "FAILED_INVALID_YEAR_DX";
}
else if (data.getResult() == StagingData.Result.FAILED_INVALID_INPUT)
{
sNewResultStr = "FAILED_INVALID_INPUT";
}
if (sNewResultStr != sOldResultStr)
{
mismatches.Add(" " + thisDataObj.miLineNum + " --> Result: EXPECTED '" + sOldResultStr + "' ACTUAL: '" + sNewResultStr + "'");
}
}
// compare output
foreach (KeyValuePair <String, String> entry in output)
{
String expected = "";
output.TryGetValue(entry.Key, out expected);
if (expected == null)
{
expected = "";
}
expected = expected.Trim();
String actual = "";
data.getOutput().TryGetValue(entry.Key, out actual);
if (actual == null)
{
actual = "";
}
actual = actual.Trim();
if (expected != actual)
{
mismatches.Add(" " + thisDataObj.miLineNum + " --> " + entry.Key + ": EXPECTED '" + expected + "' ACTUAL: '" + actual + "'");
}
}
if (mismatches.Count != 0)
{
String sSchemaIDValue = data.getSchemaId();
IntegrationUtils.WritelineToLog(" " + thisDataObj.miLineNum + " --> [" + sSchemaIDValue + "] Mismatches in " + thisDataObj.msFileName);
foreach (String mismatch in mismatches)
{
IntegrationUtils.WritelineToLog(mismatch);
}
IntegrationUtils.WritelineToLog(" " + thisDataObj.miLineNum + " *** RESULT: " + data.getResult());
IntegrationUtils.WritelineToLog(" " + thisDataObj.miLineNum + " --> Input: " + IntegrationUtils.convertInputMap(data.getInput()));
IntegrationUtils.WritelineToLog(" " + thisDataObj.miLineNum + " --> Output: " + IntegrationUtils.convertInputMap(data.getOutput()));
if (data.getErrors().Count > 0)
{
IntegrationUtils.WritelineToLog(" " + thisDataObj.miLineNum + " --> ERRORS: ");
foreach (Error e in data.getErrors())
{
IntegrationUtils.WritelineToLog(" " + thisDataObj.miLineNum + " --> (" + e.getTable() + ": " + e.getMessage() + ") ");
}
}
Interlocked.Increment(ref miMultiTask_FailedCases);
}
}
catch (Exception e)
{
IntegrationUtils.WritelineToLog(" " + thisDataObj.miLineNum + " --> Exception processing " + thisDataObj.msFileName + " : " + e.Message);
Interlocked.Increment(ref miMultiTask_FailedCases);
}
Interlocked.Increment(ref miMultiTask_ThreadProcessedCases);
}
