public static TemplateTree.IMarkup ToMarkup(aim_dotnet.IGeometricShape geometricShape, string markupText)
{
if (geometricShape == null)
return null;
if (geometricShape is aim_dotnet.Point)
{
var point = (aim_dotnet.Point)geometricShape;
var markup = new TemplateTree.MarkupPoint();
markup.Name = markupText;
markup.IncludeInAnnotation = point.IsIncludeFlag;
markup.Point = AimNativeConverter.AsPointF(point.Center);
markup.CalloutText = string.Empty; // markupText;
markup.CalloutLocation = markup.Point - new SizeF(30, 30);
SetMarkupImageReference(markup, point.Center);
return markup;
}
if (geometricShape is aim_dotnet.Circle)
{
var circle = (aim_dotnet.Circle)geometricShape;
PointF centerPt = AimNativeConverter.AsPointF(circle.Center);
PointF radiusPt = AimNativeConverter.AsPointF(circle.RadiusPoint);
double radiusLength = Vector.Distance(centerPt, radiusPt);
var markup = new TemplateTree.MarkupEllipse();
markup.Name = markupText;
markup.IncludeInAnnotation = circle.IsIncludeFlag;
markup.TopLeft = new PointF((float)(centerPt.X - radiusLength), (float)(centerPt.Y - radiusLength));
markup.BottomRight = new PointF((float)(centerPt.X + radiusLength), (float)(centerPt.Y + radiusLength));
markup.CalloutLocation = markup.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markup, circle.Center);
return markup;
}
if (geometricShape is aim_dotnet.Ellipse)
{
var ellipse = (aim_dotnet.Ellipse)geometricShape;
Debug.Assert(ellipse.EllipseCollection.Count == 4, "Ellipse must have four points");
var firstMajorAxisPt = AimNativeConverter.AsPointF(ellipse.EllipseCollection[0]);
var secondMajorAxisPt = AimNativeConverter.AsPointF(ellipse.EllipseCollection[1]);
var firstMinorAxisPt = AimNativeConverter.AsPointF(ellipse.EllipseCollection[2]);
var secondMinorAxisPt = AimNativeConverter.AsPointF(ellipse.EllipseCollection[3]);
var markup = new TemplateTree.MarkupEllipse();
markup.Name = markupText;
markup.IncludeInAnnotation = ellipse.IsIncludeFlag;
markup.TopLeft = new PointF(firstMajorAxisPt.X, firstMinorAxisPt.Y);
markup.BottomRight = new PointF(secondMajorAxisPt.X, secondMinorAxisPt.Y);
markup.CalloutLocation = markup.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markup, ellipse.EllipseCollection[0]);
return markup;
}
if (geometricShape is aim_dotnet.Polyline)
{
var polyline = (aim_dotnet.Polyline)geometricShape;
// Check if this is a non-rotated rectangle
if (polyline.SpatialCoordinateCollection.Count == 4)
{
PointF twoDPoint1 = AimNativeConverter.AsPointF(polyline.SpatialCoordinateCollection[0]);
PointF twoDPoint2 = AimNativeConverter.AsPointF(polyline.SpatialCoordinateCollection[1]);
PointF twoDPoint3 = AimNativeConverter.AsPointF(polyline.SpatialCoordinateCollection[2]);
PointF twoDPoint4 = AimNativeConverter.AsPointF(polyline.SpatialCoordinateCollection[3]);
// If it's a rectangle with sides parallel to the axes
if ((twoDPoint1.X == twoDPoint2.X && twoDPoint2.Y == twoDPoint3.Y && twoDPoint3.X == twoDPoint4.X && twoDPoint4.Y == twoDPoint1.Y) ||
(twoDPoint1.Y == twoDPoint2.Y && twoDPoint2.X == twoDPoint3.X && twoDPoint3.Y == twoDPoint4.Y && twoDPoint4.X == twoDPoint1.X))
{
var markupRectangle = new TemplateTree.MarkupRectangle();
markupRectangle.TopLeft = twoDPoint1;
markupRectangle.BottomRight = twoDPoint3;
markupRectangle.Name = markupText;
markupRectangle.IncludeInAnnotation = polyline.IsIncludeFlag;
markupRectangle.CalloutLocation = markupRectangle.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markupRectangle, polyline.SpatialCoordinateCollection[0]);
return markupRectangle;
}
}
var points = new List<PointF>();
foreach (var spatialCoordinate in polyline.SpatialCoordinateCollection)
if (spatialCoordinate is aim_dotnet.TwoDimensionSpatialCoordinate)
points.Add(AimNativeConverter.AsPointF(spatialCoordinate));
var markup = new TemplateTree.MarkupPolygonal();
markup.Vertices = points;
markup.Name = markupText;
markup.IncludeInAnnotation = polyline.IsIncludeFlag;
markup.CalloutLocation = markup.Vertices[0] - new SizeF(30, 30);
SetMarkupImageReference(markup, polyline.SpatialCoordinateCollection[0]);
return markup;
}
if (geometricShape is aim_dotnet.MultiPoint)
{
var multiPoint = (aim_dotnet.MultiPoint)geometricShape;
TemplateTree.IMarkup markup;
switch (multiPoint.SpatialCoordinateCollection.Count)
{
case 2:
{
// Line
var markupLinear = new TemplateTree.MarkupLinear();
markupLinear.Vertices = new List<PointF>(2);
markupLinear.Vertices.Add(AimNativeConverter.AsPointF(multiPoint.SpatialCoordinateCollection[0]));
markupLinear.Vertices.Add(AimNativeConverter.AsPointF(multiPoint.SpatialCoordinateCollection[1]));
markupLinear.CalloutLocation = markupLinear.Vertices[0] - new SizeF(30, 30);
markup = markupLinear;
}
break;
case 3:
{
// Protractor
var markupProtractor = new TemplateTree.MarkupProtractor();
markupProtractor.Points = new List<PointF>(3);
markupProtractor.Points.Add(AimNativeConverter.AsPointF(multiPoint.SpatialCoordinateCollection[0]));
markupProtractor.Points.Add(AimNativeConverter.AsPointF(multiPoint.SpatialCoordinateCollection[1]));
markupProtractor.Points.Add(AimNativeConverter.AsPointF(multiPoint.SpatialCoordinateCollection[2]));
markupProtractor.CalloutLocation = markupProtractor.Points[0] - new SizeF(30, 30);
markup = markupProtractor;
}
break;
default:
throw new NotImplementedException("Reading non-linear or non-triangular MultiPoint shape is not implemented");
}
markup.Name = markupText;
markup.IncludeInAnnotation = multiPoint.IsIncludeFlag;
SetMarkupImageReference(markup, multiPoint.SpatialCoordinateCollection[0]);
return markup;
}
throw new NotImplementedException();
return null;
}
public static TemplateTree.AimTemplateTree AimAnnotationToAimTemplateTree(Aim3AnnotationInstance annotationInstance, TemplateTree.AimTemplateTree template)
{
if (annotationInstance == null || annotationInstance.AimAnnotation == null)
return null;
var annotation = annotationInstance.AimAnnotation;
if (annotation.AnatomyEntityCollection != null)
{
foreach (var ae in annotation.AnatomyEntityCollection)
{
if (IsNullCodeSequence(ToStandardCodeSequence(ae)))
continue;
TemplateTree.AimTemplateTreeAnatomicEntityNode matchingTreeNode =
template.TemplateNodes.OfType<TemplateTree.AimTemplateTreeAnatomicEntityNode>().FirstOrDefault(treeAe => treeAe.Label == ae.Label);
if (matchingTreeNode != null)
{
TemplateTree.AimTemplateTreeAllowedTerm matchingAllowedTerm =
matchingTreeNode.AllowedTerms.FirstOrDefault(treeAe => ToStandardCodeSequence(treeAe).CodeValue == ae.CodeValue);
if (matchingAllowedTerm != null)
{
matchingAllowedTerm.Selected = true;
}
else
return null;
if (matchingTreeNode.HasConfidence && ae.AnnotatorConfidence.HasValue)
matchingTreeNode.ConfidenceValue = ae.AnnotatorConfidence.Value;
}
else
return null;
if (ae.AnatomicEntityCharacteristicCollection != null)
{
foreach (var aec in ae.AnatomicEntityCharacteristicCollection)
{
if (IsNullCodeSequence(ToStandardCodeSequence(aec)))
continue;
TemplateTree.AimTemplateTreeAnatomicEntityCharacteristicNode matchingAecTreeNode =
matchingTreeNode.AnatomicEntityCharacteristicTreeNodes.FirstOrDefault(treeAec => treeAec.Label == aec.Label);
if (matchingAecTreeNode != null)
{
TemplateTree.CharacteristicQuantificationAllowedTerm matchingAllowedTerm =
matchingAecTreeNode.CharacteristicQuantificationAllowedTerms.FirstOrDefault(treeAec => ToStandardCodeSequence(treeAec).CodeValue == aec.CodeValue);
if (matchingAllowedTerm != null)
{
matchingAllowedTerm.Selected = true;
foreach (var quantification in matchingAllowedTerm.CharacteristicQuantifications)
{
if (ReadBackCharacteristicQuantificationFromAnnotation(aec.CharacteristicQuantificationCollection, quantification) == null)
return null;
}
}
else
return null;
if (matchingAecTreeNode.HasConfidence && aec.AnnotatorConfidence.HasValue)
matchingAecTreeNode.ConfidenceValue = aec.AnnotatorConfidence.Value;
}
else
return null;
}
}
}
}
if (annotation.ImagingObservationCollection != null)
{
foreach (var io in annotation.ImagingObservationCollection)
{
if (IsNullCodeSequence(ToStandardCodeSequence(io)))
continue;
TemplateTree.AimTemplateTreeImagingObservationNode matchingTreeNode =
template.TemplateNodes.OfType<TemplateTree.AimTemplateTreeImagingObservationNode>().FirstOrDefault(
treeIo => treeIo.Label == io.Label);
if (matchingTreeNode != null)
{
TemplateTree.AimTemplateTreeAllowedTerm matchingAllowedTerm =
matchingTreeNode.AllowedTerms.FirstOrDefault(
treeIo => ToStandardCodeSequence(treeIo).CodeValue == io.CodeValue);
if (matchingAllowedTerm != null)
{
matchingAllowedTerm.Selected = true;
}
else
return null;
if (matchingTreeNode.HasConfidence && io.AnnotatorConfidence.HasValue)
matchingTreeNode.ConfidenceValue = io.AnnotatorConfidence.Value;
}
else
return null;
if (io.ImagingObservationCharacteristicCollection != null)
{
foreach (var ioc in io.ImagingObservationCharacteristicCollection)
{
if (IsNullCodeSequence(ToStandardCodeSequence(ioc)))
continue;
TemplateTree.AimTemplateTreeImagingObservationCharacteristicNode matchingIocTreeNode =
matchingTreeNode.ImagingObservationCharacteristicTreeNodes.FirstOrDefault(
treeIoc => treeIoc.Label == ioc.Label);
if (matchingIocTreeNode != null)
{
TemplateTree.CharacteristicQuantificationAllowedTerm matchingAllowedTerm =
matchingIocTreeNode.CharacteristicQuantificationAllowedTerms.FirstOrDefault(
treeIoc => ToStandardCodeSequence(treeIoc).CodeValue == ioc.CodeValue);
if (matchingAllowedTerm != null)
{
matchingAllowedTerm.Selected = true;
foreach (var quantification in matchingAllowedTerm.CharacteristicQuantifications)
{
if (ReadBackCharacteristicQuantificationFromAnnotation(ioc.CharacteristicQuantificationCollection, quantification) == null)
return null;
}
}
else
return null;
if (matchingIocTreeNode.HasConfidence && ioc.AnnotatorConfidence.HasValue)
matchingIocTreeNode.ConfidenceValue = ioc.AnnotatorConfidence.Value;
}
else
return null;
}
}
}
}
if (annotation.CalculationCollection != null)
{
//foreach (var calc in annotation.CalculationCollection)
//{
// AimTemplateTreeCalculationNode matchingTreeNode =
// template.TemplateNodes.OfType<AimTemplateTreeCalculationNode>().FirstOrDefault(
// treeCalc => treeCalc.Label == calc.Description);
// if (matchingTreeNode != null)
// {
// AimTemplateTreeCalculationType matchingCalculationType =
// matchingTreeNode.CalculationTypes.FirstOrDefault(
// treeCalc => ToStandardCodeSequence(treeCalc).CodeValue == calc.CodeValue);
// if (matchingCalculationType != null)
// {
// matchingTreeNode.SelectedCalculationType = matchingCalculationType;
// }
// else
// return null;
// //if (matchingTreeNode.HasConfidence && calc..HasValue)
// // matchingTreeNode.ConfidenceValue = calc.AnnotatorConfidence.Value;
// }
// else
// return null;
//}
}
if (annotation.InferenceCollection != null)
{
foreach (var inference in annotation.InferenceCollection)
{
if (IsNullCodeSequence(ToStandardCodeSequence(inference)))
continue;
foreach (var inferenceNode in template.TemplateNodes.OfType<TemplateTree.AimTemplateTreeInferenceNode>())
{
TemplateTree.AimTemplateTreeAllowedTerm matchingAllowedTerm =
inferenceNode.AllowedTerms.FirstOrDefault(
term => ToStandardCodeSequence(term).CodeValue == inference.CodeValue);
if (matchingAllowedTerm != null)
matchingAllowedTerm.Selected = true;
}
}
}
template.Markup.Clear();
if (annotation is aim_dotnet.ImageAnnotation)
{
var imageAnnotation = (aim_dotnet.ImageAnnotation)annotation;
var annotationName = string.IsNullOrEmpty(imageAnnotation.Name) ? "" : imageAnnotation.Name;
if (imageAnnotation.GeometricShapeCollection != null)
{
foreach (var geometricShape in imageAnnotation.GeometricShapeCollection)
{
var markup = ToMarkup(geometricShape, annotationName);
if (markup != null)
template.Markup.Add(markup);
}
}
if (imageAnnotation.TextAnnotationCollection != null)
{
foreach (var textAnnotation in imageAnnotation.TextAnnotationCollection)
{
if (textAnnotation.ConnectorPoints != null && textAnnotation.ConnectorPoints.SpatialCoordinateCollection != null)
{
var calloutText = AimHelpers.FormatPointCalloutText(annotationName, textAnnotation.Text);
switch (textAnnotation.ConnectorPoints.SpatialCoordinateCollection.Count)
{
case 1:
{
var markup = new TemplateTree.MarkupPoint();
markup.Name = annotationName;
markup.IncludeInAnnotation = textAnnotation.ConnectorPoints.IsIncludeFlag;
markup.Point = AimNativeConverter.AsPointF(textAnnotation.ConnectorPoints.SpatialCoordinateCollection[0]);
markup.CalloutText = calloutText;
markup.CalloutLocation = new PointF(markup.Point.X, markup.Point.Y);
SetMarkupImageReference(markup, textAnnotation.ConnectorPoints.SpatialCoordinateCollection[0]);
markup.UseCrosshair = AimSettings.Default.UseCrosshairsForTextCallouts;
template.Markup.Add(markup);
}
break;
case 2:
{
var markup = new TemplateTree.MarkupPoint();
markup.Name = annotationName;
markup.IncludeInAnnotation = textAnnotation.ConnectorPoints.IsIncludeFlag;
markup.Point = AimNativeConverter.AsPointF(textAnnotation.ConnectorPoints.SpatialCoordinateCollection[0]);
markup.CalloutText = calloutText;
markup.CalloutLocation = AimNativeConverter.AsPointF(textAnnotation.ConnectorPoints.SpatialCoordinateCollection[1]);
SetMarkupImageReference(markup, textAnnotation.ConnectorPoints.SpatialCoordinateCollection[0]);
markup.UseCrosshair = AimSettings.Default.UseCrosshairsForTextCallouts;
template.Markup.Add(markup);
}
break;
default:
Platform.Log(LogLevel.Error, "TextAnnotation has [{0}] Connector Points", textAnnotation.ConnectorPoints.SpatialCoordinateCollection.Count);
break;
}
}
}
}
}
return template;
}