public void GetOverlapFractions_ReturnNulls_DifferentChroms() { var saInterval = new ChromosomeInterval(ChromosomeUtilities.Chr1, 1, 2); var variant = new SimpleVariant(ChromosomeUtilities.Chr2, 1, 2, null, null, VariantType.deletion); var(reciprocalOverlap, annotationOverlap) = SuppIntervalUtilities.GetOverlapFractions(saInterval, variant); Assert.Null(reciprocalOverlap); Assert.Null(annotationOverlap); }
public void GetOverlapFractions_ReturnNulls_BreakEnd() { var saInterval = new ChromosomeInterval(ChromosomeUtilities.Chr1, 2, 1); var variant = new SimpleVariant(ChromosomeUtilities.Chr1, 1, 2, null, null, VariantType.translocation_breakend); var(reciprocalOverlap, annotationOverlap) = SuppIntervalUtilities.GetOverlapFractions(saInterval, variant); Assert.Null(reciprocalOverlap); Assert.Null(annotationOverlap); }
public void GetOverlapFractions_NotNull_AsExpected(int varStart, int varEnd, int saStart, int saEnd, double expectedReciprocalOverlap, double expecedAnnotationOverlap) { var saInterval = new ChromosomeInterval(ChromosomeUtilities.Chr1, saStart, saEnd); var variant = new SimpleVariant(ChromosomeUtilities.Chr1, varStart, varEnd, null, null, VariantType.deletion); var(reciprocalOverlap, annotationOverlap) = SuppIntervalUtilities.GetOverlapFractions(saInterval, variant); Assert.NotNull(reciprocalOverlap); Assert.NotNull(annotationOverlap); Assert.Equal(expectedReciprocalOverlap, reciprocalOverlap.Value, 5); Assert.Equal(expecedAnnotationOverlap, annotationOverlap.Value, 5); }