/// <summary>
/// Initializes a new instance of the <see cref="SequenceData"/> class.
/// </summary>
/// <param name="matterId">
/// The matter id.
/// </param>
/// <param name="matterName">
/// The matter name.
/// </param>
/// <param name="remoteId">
/// Sequence web api id.
/// </param>
/// <param name="characteristic">
/// The characteristic.
/// </param>
/// <param name="subsequencesData">
/// The genes data.
/// </param>
public SequenceData(long matterId, string matterName, string remoteId, double characteristic, SubsequenceData[] subsequencesData)
{
MatterId = matterId;
MatterName = matterName;
RemoteId = remoteId;
Characteristic = characteristic;
SubsequencesData = subsequencesData;
}
public ActionResult Index(
long[] matterIds,
short characteristicLinkId,
short subsequencesCharacteristicLinkId,
Feature[] features,
string maxPercentageDifference,
string[] filters)
{
return(CreateTask(() =>
{
double percentageDifference = double.Parse(maxPercentageDifference, CultureInfo.InvariantCulture) / 100;
var attributeValuesCache = new AttributeValueCacheManager();
var characteristics = new SubsequenceData[matterIds.Length][];
long[] parentSequenceIds;
var matterNames = new string[matterIds.Length];
int mattersCount = matterIds.Length;
Dictionary <string, object> characteristicsTypesData;
using (var db = new LibiadaWebEntities())
{
// Sequences characteristic
var geneticSequenceRepository = new GeneticSequenceRepository(db);
long[] chains = geneticSequenceRepository.GetNucleotideSequenceIds(matterIds);
// Sequences characteristic
matterIds = OrderMatterIds(matterIds, characteristicLinkId, chains);
// Subsequences characteristics
var parentSequences = db.DnaSequence.Include(s => s.Matter)
.Where(s => s.Notation == Notation.Nucleotides && matterIds.Contains(s.MatterId))
.Select(s => new { s.Id, s.MatterId, MatterName = s.Matter.Name })
.ToDictionary(s => s.Id);
parentSequenceIds = parentSequences
.OrderBy(ps => Array.IndexOf(matterIds, ps.Value.MatterId))
.Select(ps => ps.Key)
.ToArray();
for (int n = 0; n < parentSequenceIds.Length; n++)
{
matterNames[n] = parentSequences[parentSequenceIds[n]].MatterName;
}
var viewDataHelper = new ViewDataHelper(db);
characteristicsTypesData = viewDataHelper.GetCharacteristicsData(CharacteristicCategory.Full);
}
FullCharacteristicRepository fullCharacteristicRepository = FullCharacteristicRepository.Instance;
string sequenceCharacteristicName = fullCharacteristicRepository.GetCharacteristicName(characteristicLinkId);
string characteristicName = fullCharacteristicRepository.GetCharacteristicName(subsequencesCharacteristicLinkId);
var characteristicValueSubsequences = new Dictionary <double, List <(int matterIndex, int subsequenceIndex)> >();
// cycle through matters
for (int i = 0; i < mattersCount; i++)
{
SubsequenceData[] subsequencesData = CalculateSubsequencesCharacteristics(
new[] { subsequencesCharacteristicLinkId },
features,
parentSequenceIds[i],
filters);
characteristics[i] = subsequencesData;
attributeValuesCache.FillAttributeValues(subsequencesData);
for (int j = 0; j < subsequencesData.Length; j++)
{
double value = subsequencesData[j].CharacteristicsValues[0];
if (characteristicValueSubsequences.TryGetValue(value, out List <(int matterIndex, int subsequenceIndex)> matterAndSubsequenceIdsList))
{
matterAndSubsequenceIdsList.Add((i, j));
}
