public SNPFeatures(StringByteFeatures str) : this(modshogunPINVOKE.new_SNPFeatures__SWIG_1(StringByteFeatures.getCPtr(str)), true)
{
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
}
public StringByteFeatures(StringByteFeatures orig) : this(modshogunPINVOKE.new_StringByteFeatures__SWIG_5(StringByteFeatures.getCPtr(orig)), true)
{
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
}
public HashedWDFeatures(StringByteFeatures str, int start_order, int order, int from_order) : this(modshogunPINVOKE.new_HashedWDFeatures__SWIG_2(StringByteFeatures.getCPtr(str), start_order, order, from_order), true)
{
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
}
public WDSVMOcas(double C, int d, int from_d, StringByteFeatures traindat, Labels trainlab) : this(modshogunPINVOKE.new_WDSVMOcas__SWIG_2(C, d, from_d, StringByteFeatures.getCPtr(traindat), Labels.getCPtr(trainlab)), true)
{
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
}
public void set_features(StringByteFeatures feat)
{
modshogunPINVOKE.WDSVMOcas_set_features(swigCPtr, StringByteFeatures.getCPtr(feat));
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
string filename = "../data/snps.dat";
StringByteFeatures sf = new StringByteFeatures(EAlphabet.SNP);
sf.load_ascii_file(filename, false, EAlphabet.SNP, EAlphabet.SNP);
SNPFeatures snps = new SNPFeatures(sf);
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
string filename = "../data/snps.dat";
StringByteFeatures sf = new StringByteFeatures(EAlphabet.SNP);
sf.load_ascii_file(filename, false, EAlphabet.SNP, EAlphabet.SNP);
SNPFeatures snps = new SNPFeatures(sf);
modshogun.exit_shogun();
}
public bool append_features(StringByteFeatures sf)
{
bool ret = modshogunPINVOKE.StringByteFeatures_append_features(swigCPtr, StringByteFeatures.getCPtr(sf));
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
public static void Main() {
modshogun.init_shogun_with_defaults();
int order = 3;
int start_order = 1;
int hash_bits = 2;
int from_order = order;
StringByteFeatures f = new StringByteFeatures(EAlphabet.RAWDNA);
HashedWDFeatures y = new HashedWDFeatures(f,start_order,order,from_order,hash_bits);
}
public StringByteFeatures get_features()
{
IntPtr cPtr = modshogunPINVOKE.WDSVMOcas_get_features(swigCPtr);
StringByteFeatures ret = (cPtr == IntPtr.Zero) ? null : new StringByteFeatures(cPtr, false);
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
public static void Main()
{
modshogun.init_shogun_with_defaults();
int order = 3;
int start_order = 1;
int hash_bits = 2;
int from_order = order;
StringByteFeatures f = new StringByteFeatures(EAlphabet.RAWDNA);
HashedWDFeatures y = new HashedWDFeatures(f, start_order, order, from_order, hash_bits);
}
public StringByteFeatures get_transposed()
{
IntPtr cPtr = modshogunPINVOKE.StringByteFeatures_get_transposed(swigCPtr);
StringByteFeatures ret = (cPtr == IntPtr.Zero) ? null : new StringByteFeatures(cPtr, true);
if (modshogunPINVOKE.SWIGPendingException.Pending)
{
throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
return(ret);
}
internal static ArrayList run(string filename)
{
filename = fname;
modshogun.init_shogun_with_defaults();
StringByteFeatures sf = new StringByteFeatures(SNP);
sf.load_ascii_file(fname, false, SNP, SNP);
SNPFeatures snps = new SNPFeatures(sf);
ArrayList result = new ArrayList();
result.Add(snps);
modshogun.exit_shogun();
return result;
}
internal static ArrayList run(IList para)
{
bool reverse = false;
modshogun.init_shogun_with_defaults();
DoubleMatrix A = (DoubleMatrix)para[0];
int order = (int)((int?)para[1]);
int start_order = (int)((int?)para[2]);
int hash_bits = (int)((int?)para[3]);
int from_order = order;
StringByteFeatures f = new StringByteFeatures(RAWDNA);
//f.set_features(new DoubleMatrix(new double[][]{{0,1,2,3,0,1,2,3,3,2,2,1,1}}));
HashedWDFeatures y = new HashedWDFeatures(f,start_order,order,from_order,hash_bits);
//DoubleMatrix fm = y.get_feature_matrix();
ArrayList result = new ArrayList();
result.Add(y);
modshogun.exit_shogun();
return result;
}
public HashedWDFeatures(StringByteFeatures str, int start_order, int order, int from_order) : this(modshogunPINVOKE.new_HashedWDFeatures__SWIG_2(StringByteFeatures.getCPtr(str), start_order, order, from_order), true) {
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
public StringByteFeatures(StringByteFeatures orig) : this(modshogunPINVOKE.new_StringByteFeatures__SWIG_5(StringByteFeatures.getCPtr(orig)), true) {
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
public void set_features(StringByteFeatures feat) {
modshogunPINVOKE.WDSVMOcas_set_features(swigCPtr, StringByteFeatures.getCPtr(feat));
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
public WDSVMOcas(double C, int d, int from_d, StringByteFeatures traindat, Labels trainlab) : this(modshogunPINVOKE.new_WDSVMOcas__SWIG_2(C, d, from_d, StringByteFeatures.getCPtr(traindat), Labels.getCPtr(trainlab)), true) {
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
public bool append_features(StringByteFeatures sf) {
bool ret = modshogunPINVOKE.StringByteFeatures_append_features(swigCPtr, StringByteFeatures.getCPtr(sf));
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
return ret;
}
internal static HandleRef getCPtr(StringByteFeatures obj)
{
return((obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr);
}
public SNPFeatures(StringByteFeatures str) : this(modshogunPINVOKE.new_SNPFeatures__SWIG_1(StringByteFeatures.getCPtr(str)), true) {
if (modshogunPINVOKE.SWIGPendingException.Pending) throw modshogunPINVOKE.SWIGPendingException.Retrieve();
}
internal static HandleRef getCPtr(StringByteFeatures obj) {
return (obj == null) ? new HandleRef(null, IntPtr.Zero) : obj.swigCPtr;
}
