public static DicomFile Open(Stream stream, Encoding fallbackEncoding)
{
if (fallbackEncoding == null)
{
throw new ArgumentNullException("fallbackEncoding");
}
var df = new DicomFile();
try {
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
reader.Read(source,
new DicomDatasetReaderObserver(df.FileMetaInfo),
new DicomDatasetReaderObserver(df.Dataset, fallbackEncoding));
df.Format = reader.FileFormat;
df.Dataset.InternalTransferSyntax = reader.Syntax;
return(df);
} catch (Exception e) {
throw new DicomFileException(df, e.Message, e);
}
}
/// <summary>
/// Asynchronously read DICOM Directory from stream.
/// </summary>
/// <param name="stream">Stream to read.</param>
/// <param name="fallbackEncoding">Encoding to apply if it cannot be identified from DICOM directory.</param>
/// <param name="stop">Stop criterion in dataset.</param>
/// <returns>Awaitable <see cref="DicomDirectory"/> instance.</returns>
public static new async Task <DicomDirectory> OpenAsync(Stream stream, Encoding fallbackEncoding, Func <ParseState, bool> stop = null)
{
if (fallbackEncoding == null)
{
throw new ArgumentNullException(nameof(fallbackEncoding));
}
var df = new DicomDirectory();
try
{
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
var dirObserver = new DicomDirectoryReaderObserver(df.Dataset);
var result =
await
reader.ReadAsync(
source,
new DicomDatasetReaderObserver(df.FileMetaInfo),
new DicomReaderMultiObserver(
new DicomDatasetReaderObserver(df.Dataset, fallbackEncoding),
dirObserver),
stop).ConfigureAwait(false);
return(FinalizeDicomDirectoryLoad(df, reader, dirObserver, result));
}
catch (Exception e)
{
throw new DicomFileException(df, e.Message, e);
}
}
public void Read_ValidExplicitVRSequence_YieldsSuccess(byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader {
IsExplicitVR = true
};
var observer = new MockObserver();
var result = reader.Read(source, observer);
Assert.Equal(DicomReaderResult.Success, result);
}
public void EndRead_ValidSource_ReturnsSuccess()
{
using (var stream = File.OpenRead(@".\Test Data\CT1_J2KI"))
{
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
const DicomReaderResult expected = DicomReaderResult.Success;
var actual = reader.EndRead(
reader.BeginRead(source, new MockObserver(), new MockObserver(), null, null));
Assert.Equal(expected, actual);
}
}
public void BeginRead_ValidExplicitVRData_YieldsSuccess(DicomTag tag, DicomVR vr, string data, byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader { IsExplicitVR = true };
var observer = new LastElementObserver();
var result = reader.EndRead(reader.BeginRead(source, observer, null, null, null));
Assert.Equal(DicomReaderResult.Success, result);
Assert.Equal(tag, observer.Tag);
Assert.Equal(vr, observer.VR);
Assert.Equal(data, observer.Data);
}
public void EndRead_ValidSource_ReturnsSuccess()
{
using (var stream = File.OpenRead(@".\Test Data\CT1_J2KI"))
{
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
const DicomReaderResult expected = DicomReaderResult.Success;
var actual = reader.EndRead(
reader.BeginRead(source, new MockObserver(), new MockObserver(), null, null));
Assert.Equal(expected, actual);
}
}
public void BeginRead_ValidExplicitVRData_YieldsSuccess(DicomTag tag, DicomVR vr, string data, byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader {
IsExplicitVR = true
};
var observer = new LastElementObserver();
var result = reader.EndRead(reader.BeginRead(source, observer, null, null, null));
Assert.Equal(DicomReaderResult.Success, result);
Assert.Equal(tag, observer.Tag);
Assert.Equal(vr, observer.VR);
Assert.Equal(data, observer.Data);
}
public void Read_CompressedImage_RecognizeTransferSyntax()
{
using var stream = File.OpenRead(TestData.Resolve("CT1_J2KI"));
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
var fileMetaInfo = new DicomFileMetaInformation();
var dataset = new DicomDataset();
reader.Read(
source,
new DicomDatasetReaderObserver(fileMetaInfo),
new DicomDatasetReaderObserver(dataset));
var expected = DicomTransferSyntax.JPEG2000Lossy;
var actual = reader.Syntax;
Assert.Equal(expected, actual);
}
/// <summary>
/// Asynchronously read a DICOM file from stream.
/// </summary>
/// <param name="stream">Stream to read.</param>
/// <param name="fallbackEncoding">Encoding to use if encoding cannot be obtained from DICOM file.</param>
/// <param name="stop">Stop criterion in dataset.</param>
/// <param name="readOption">The option how to deal with large DICOM tags like pixel data.</param>
/// <returns>Awaitable <see cref="DicomFile"/> instance.</returns>
public static async Task <DicomFile> OpenAsync(Stream stream, Encoding fallbackEncoding, Func <ParseState, bool> stop = null, FileReadOption readOption = FileReadOption.Default)
{
if (fallbackEncoding == null)
{
throw new ArgumentNullException(nameof(fallbackEncoding));
}
var df = new DicomFile();
try
{
var source = new StreamByteSource(stream, readOption);
using (var unvalidated = new UnvalidatedScope(df.Dataset))
{
var reader = new DicomFileReader();
var result =
await
reader.ReadAsync(
source,
new DicomDatasetReaderObserver(df.FileMetaInfo),
new DicomDatasetReaderObserver(df.Dataset, fallbackEncoding),
stop).ConfigureAwait(false);
if (result == DicomReaderResult.Processing)
{
throw new DicomFileException(df, $"Invalid read return state: {result}");
}
if (result == DicomReaderResult.Error)
{
return(null);
}
df.IsPartial = result == DicomReaderResult.Stopped || result == DicomReaderResult.Suspended;
df.Format = reader.FileFormat;
df.Dataset.InternalTransferSyntax = reader.Syntax;
return(df);
}
}
catch (Exception e)
{
throw new DicomFileException(df, e.Message, e);
}
}
public void Read_CompressedImage_RecognizeTransferSyntax()
{
using (var stream = File.OpenRead(@".\Test Data\CT1_J2KI"))
{
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
var fileMetaInfo = new DicomFileMetaInformation();
var dataset = new DicomDataset();
reader.Read(
source,
new DicomDatasetReaderObserver(fileMetaInfo),
new DicomDatasetReaderObserver(dataset));
var expected = DicomTransferSyntax.JPEG2000Lossy;
var actual = reader.Syntax;
Assert.Equal(expected, actual);
}
}
public static DicomFile Open(Stream stream)
{
var df = new DicomFile();
try {
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
reader.Read(source,
new DicomDatasetReaderObserver(df.FileMetaInfo),
new DicomDatasetReaderObserver(df.Dataset));
df.Format = reader.FileFormat;
df.Dataset.InternalTransferSyntax = reader.Syntax;
return(df);
} catch (Exception e) {
throw new DicomFileException(df, e.Message, e);
}
}
public async Task ReadAsync_CompressedImage_RecognizeTransferSyntax()
{
using (var stream = File.OpenRead(@".\Test Data\CT1_J2KI"))
{
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
var fileMetaInfo = new DicomFileMetaInformation();
var dataset = new DicomDataset();
await
reader.ReadAsync(
source,
new DicomDatasetReaderObserver(fileMetaInfo),
new DicomDatasetReaderObserver(dataset));
var expected = DicomTransferSyntax.JPEG2000Lossy;
var actual = reader.Syntax;
Assert.Equal(expected, actual);
}
}
public void Read_ValidSource_ReturnsSuccess()
{
using var stream = File.OpenRead(TestData.Resolve("CT1_J2KI"));
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
var fileMetaInfo = new DicomFileMetaInformation();
var dataset = new DicomDataset();
const DicomReaderResult expected = DicomReaderResult.Success;
var actual = reader.Read(
source,
new DicomDatasetReaderObserver(fileMetaInfo),
new DicomDatasetReaderObserver(dataset));
Assert.Equal(expected, actual);
var modality = dataset.GetString(DicomTag.Modality);
Assert.Equal("CT", modality);
}
/// <summary>
/// Read a DICOM file from stream.
/// </summary>
/// <param name="stream">Stream to read.</param>
/// <param name="fallbackEncoding">Encoding to use if encoding cannot be obtained from DICOM file.</param>
/// <param name="stop">Stop criterion in dataset.</param>
/// <returns>Read <see cref="DicomFile"/>.</returns>
public static DicomFile Open(Stream stream, Encoding fallbackEncoding, Func <ParseState, bool> stop = null)
{
if (fallbackEncoding == null)
{
throw new ArgumentNullException("fallbackEncoding");
}
var df = new DicomFile();
try
{
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
var result = reader.Read(
source,
new DicomDatasetReaderObserver(df.FileMetaInfo),
new DicomDatasetReaderObserver(df.Dataset, fallbackEncoding),
stop);
if (result == DicomReaderResult.Processing)
{
throw new DicomFileException(df, "Invalid read return state: {state}", result);
}
if (result == DicomReaderResult.Error)
{
return(null);
}
df.IsPartial = result == DicomReaderResult.Stopped || result == DicomReaderResult.Suspended;
df.Format = reader.FileFormat;
df.Dataset.InternalTransferSyntax = reader.Syntax;
return(df);
}
catch (Exception e)
{
throw new DicomFileException(df, e.Message, e);
}
}
public void Read_ValidSource_ReturnsSuccess()
{
using (var stream = File.OpenRead(@".\Test Data\CT1_J2KI"))
{
var source = new StreamByteSource(stream);
var reader = new DicomFileReader();
var fileMetaInfo = new DicomFileMetaInformation();
var dataset = new DicomDataset();
const DicomReaderResult expected = DicomReaderResult.Success;
var actual = reader.Read(
source,
new DicomDatasetReaderObserver(fileMetaInfo),
new DicomDatasetReaderObserver(dataset));
Assert.Equal(expected, actual);
var modality = dataset.Get<string>(DicomTag.Modality);
Assert.Equal("CT", modality);
}
}
private void ProcessPDataTF(object state)
{
var pdu = (PDataTF)state;
try {
foreach (var pdv in pdu.PDVs)
{
if (_dimse == null)
{
// create stream for receiving command
if (_dimseStream == null)
{
_dimseStream = new MemoryStream();
}
}
else
{
// create stream for receiving dataset
if (_dimseStream == null)
{
if (_dimse.Type == DicomCommandField.CStoreRequest)
{
var pc = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
var file = new DicomFile();
file.FileMetaInfo.MediaStorageSOPClassUID = pc.AbstractSyntax;
file.FileMetaInfo.MediaStorageSOPInstanceUID = _dimse.Command.Get <DicomUID>(DicomTag.AffectedSOPInstanceUID);
file.FileMetaInfo.TransferSyntax = pc.AcceptedTransferSyntax;
file.FileMetaInfo.ImplementationClassUID = Association.RemoteImplemetationClassUID;
file.FileMetaInfo.ImplementationVersionName = Association.RemoteImplementationVersion;
file.FileMetaInfo.SourceApplicationEntityTitle = Association.CallingAE;
_dimseStream = CreateCStoreReceiveStream(file);
}
else
{
_dimseStream = new MemoryStream();
}
}
}
_dimseStream.Write(pdv.Value, 0, pdv.Value.Length);
if (pdv.IsLastFragment)
{
if (pdv.IsCommand)
{
_dimseStream.Seek(0, SeekOrigin.Begin);
var command = new DicomDataset();
var reader = new DicomReader();
reader.IsExplicitVR = false;
reader.Read(new StreamByteSource(_dimseStream), new DicomDatasetReaderObserver(command));
_dimseStream = null;
var type = command.Get <DicomCommandField>(DicomTag.CommandField);
switch (type)
{
case DicomCommandField.CStoreRequest:
_dimse = new DicomCStoreRequest(command);
break;
case DicomCommandField.CStoreResponse:
_dimse = new DicomCStoreResponse(command);
break;
case DicomCommandField.CFindRequest:
_dimse = new DicomCFindRequest(command);
break;
case DicomCommandField.CFindResponse:
_dimse = new DicomCFindResponse(command);
break;
case DicomCommandField.CMoveRequest:
_dimse = new DicomCMoveRequest(command);
break;
case DicomCommandField.CMoveResponse:
_dimse = new DicomCMoveResponse(command);
break;
case DicomCommandField.CEchoRequest:
_dimse = new DicomCEchoRequest(command);
break;
case DicomCommandField.CEchoResponse:
_dimse = new DicomCEchoResponse(command);
break;
case DicomCommandField.NActionRequest:
_dimse = new DicomNActionRequest(command);
break;
case DicomCommandField.NActionResponse:
_dimse = new DicomNActionResponse(command);
break;
case DicomCommandField.NCreateRequest:
_dimse = new DicomNCreateRequest(command);
break;
case DicomCommandField.NCreateResponse:
_dimse = new DicomNCreateResponse(command);
break;
case DicomCommandField.NDeleteRequest:
_dimse = new DicomNDeleteRequest(command);
break;
case DicomCommandField.NDeleteResponse:
_dimse = new DicomNDeleteResponse(command);
break;
case DicomCommandField.NEventReportRequest:
_dimse = new DicomNEventReportRequest(command);
break;
case DicomCommandField.NEventReportResponse:
_dimse = new DicomNEventReportResponse(command);
break;
case DicomCommandField.NGetRequest:
_dimse = new DicomNGetRequest(command);
break;
case DicomCommandField.NGetResponse:
_dimse = new DicomNGetResponse(command);
break;
case DicomCommandField.NSetRequest:
_dimse = new DicomNSetRequest(command);
break;
case DicomCommandField.NSetResponse:
_dimse = new DicomNSetResponse(command);
break;
default:
_dimse = new DicomMessage(command);
break;
}
_dimse.PresentationContext = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
if (!_dimse.HasDataset)
{
if (DicomMessage.IsRequest(_dimse.Type))
{
ThreadPool.QueueUserWorkItem(PerformDimseCallback, _dimse);
}
else
{
_processQueue.Queue((_dimse as DicomResponse).RequestMessageID, PerformDimseCallback, _dimse);
}
_dimse = null;
return;
}
}
else
{
if (_dimse.Type != DicomCommandField.CStoreRequest)
{
_dimseStream.Seek(0, SeekOrigin.Begin);
var pc = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
_dimse.Dataset = new DicomDataset();
_dimse.Dataset.InternalTransferSyntax = pc.AcceptedTransferSyntax;
var source = new StreamByteSource(_dimseStream);
source.Endian = pc.AcceptedTransferSyntax.Endian;
var reader = new DicomReader();
reader.IsExplicitVR = pc.AcceptedTransferSyntax.IsExplicitVR;
reader.Read(source, new DicomDatasetReaderObserver(_dimse.Dataset));
_dimseStream = null;
}
else
{
var request = _dimse as DicomCStoreRequest;
try
{
var dicomFile = GetCStoreDicomFile();
_dimseStream = null;
_isTempFile = false;
// NOTE: dicomFile will be valid with the default implementation of CreateCStoreReceiveStream() and
// GetCStoreDicomFile(), but can be null if a child class overrides either method and changes behavior.
// See documentation on CreateCStoreReceiveStream() and GetCStoreDicomFile() for information about why
// this might be desired.
request.File = dicomFile;
if (request.File != null)
{
request.Dataset = request.File.Dataset;
}
}
catch (Exception e)
{
var fileName = "";
if (_dimseStream is FileStream)
{
fileName = (_dimseStream as FileStream).Name;
}
// failed to parse received DICOM file; send error response instead of aborting connection
SendResponse(new DicomCStoreResponse(request, new DicomStatus(DicomStatus.ProcessingFailure, e.Message)));
Logger.Error("Error parsing C-Store dataset: " + e.ToString());
(this as IDicomCStoreProvider).OnCStoreRequestException(fileName, e);
return;
}
}
if (DicomMessage.IsRequest(_dimse.Type))
{
ThreadPool.QueueUserWorkItem(PerformDimseCallback, _dimse);
}
else
{
_processQueue.Queue((_dimse as DicomResponse).RequestMessageID, PerformDimseCallback, _dimse);
}
_dimse = null;
}
}
}
} catch (Exception e) {
SendAbort(DicomAbortSource.ServiceUser, DicomAbortReason.NotSpecified);
Logger.Error("Exception processing P-Data-TF PDU: " + e.ToString());
} finally {
SendNextMessage();
}
}
private void ProcessPDataTF(PDataTF pdu)
{
try {
foreach (var pdv in pdu.PDVs)
{
if (_dimse == null)
{
// create stream for receiving command
if (_dimseStream == null)
{
_dimseStream = new MemoryStream();
}
}
else
{
// create stream for receiving dataset
if (_dimseStream == null)
{
if (_dimse.Type == DicomCommandField.CStoreRequest)
{
var pc = Association.PresentationContexts.FirstOrDefault(x => x.ID == pdv.PCID);
var file = new DicomFile();
file.FileMetaInfo.MediaStorageSOPClassUID = pc.AbstractSyntax;
file.FileMetaInfo.MediaStorageSOPInstanceUID = _dimse.Command.Get <DicomUID>(DicomTag.AffectedSOPInstanceUID);
file.FileMetaInfo.TransferSyntax = pc.AcceptedTransferSyntax;
file.FileMetaInfo.ImplementationClassUID = Association.RemoteImplemetationClassUID;
file.FileMetaInfo.ImplementationVersionName = Association.RemoteImplementationVersion;
file.FileMetaInfo.SourceApplicationEntityTitle = Association.CallingAE;
string fileName;
if (this is IDicomCStoreProvider)
{
fileName = (this as IDicomCStoreProvider).GetTempFileName(file.FileMetaInfo.MediaStorageSOPInstanceUID);
}
else
{
throw new DicomNetworkException("C-Store SCP not implemented");
}
file.Save(fileName);
_dimseStream = File.OpenWrite(fileName);
_dimseStream.Seek(0, SeekOrigin.End);
}
else
{
_dimseStream = new MemoryStream();
}
}
}
_dimseStream.Write(pdv.Value, 0, pdv.Value.Length);
if (pdv.IsLastFragment)
{
if (pdv.IsCommand)
{
_dimseStream.Seek(0, SeekOrigin.Begin);
var command = new DicomDataset();
var reader = new DicomReader();
reader.IsExplicitVR = false;
reader.Read(new StreamByteSource(_dimseStream), new DicomDatasetReaderObserver(command));
_dimseStream = null;
var type = command.Get <DicomCommandField>(DicomTag.CommandField);
switch (type)
{
case DicomCommandField.CStoreRequest:
_dimse = new DicomCStoreRequest(command);
break;
case DicomCommandField.CStoreResponse:
_dimse = new DicomCStoreResponse(command);
break;
case DicomCommandField.CFindRequest:
_dimse = new DicomCFindRequest(command);
break;
case DicomCommandField.CFindResponse:
_dimse = new DicomCFindResponse(command);
break;
case DicomCommandField.CMoveRequest:
_dimse = new DicomCMoveRequest(command);
break;
case DicomCommandField.CMoveResponse:
_dimse = new DicomCMoveResponse(command);
break;
case DicomCommandField.CEchoRequest:
_dimse = new DicomCEchoRequest(command);
break;
case DicomCommandField.CEchoResponse:
_dimse = new DicomCEchoResponse(command);
break;
default:
_dimse = new DicomMessage(command);
break;
}
if (!_dimse.HasDataset)
{
ThreadPool.QueueUserWorkItem(PerformDimseCallback, _dimse);
_dimse = null;
return;
}
}
else
{
if (_dimse.Type != DicomCommandField.CStoreRequest)
{
_dimseStream.Seek(0, SeekOrigin.Begin);
_dimse.Dataset = new DicomDataset();
_dimse.Dataset.InternalTransferSyntax = _dimse.Command.InternalTransferSyntax;
var source = new StreamByteSource(_dimseStream);
source.Endian = _dimse.Command.InternalTransferSyntax.Endian;
var reader = new DicomReader();
reader.IsExplicitVR = _dimse.Command.InternalTransferSyntax.IsExplicitVR;
reader.Read(source, new DicomDatasetReaderObserver(_dimse.Dataset));
_dimseStream = null;
}
else
{
var fileName = (_dimseStream as FileStream).Name;
_dimseStream.Close();
_dimseStream = null;
var request = _dimse as DicomCStoreRequest;
request.File = DicomFile.Open(fileName);
request.File.File.IsTempFile = true;
request.Dataset = request.File.Dataset;
}
ThreadPool.QueueUserWorkItem(PerformDimseCallback, _dimse);
_dimse = null;
}
}
}
} catch (Exception e) {
SendAbort(DicomAbortSource.ServiceUser, DicomAbortReason.NotSpecified);
Logger.Log(LogLevel.Error, e.ToString());
} finally {
SendNextMessage();
}
}
public void Read_ValidExplicitVRSequence_YieldsSuccess(byte[] bytes)
{
var stream = new MemoryStream(bytes);
var source = new StreamByteSource(stream);
var reader = new DicomReader { IsExplicitVR = true };
var observer = new MockObserver();
var result = reader.Read(source, observer);
Assert.Equal(DicomReaderResult.Success, result);
}
