public ImplementationGuideGenerator(IObjectRepository tdb, int implementationGuideId, IEnumerable <int> templateIds)
{
this._tdb = tdb;
this.implementationGuide = tdb.ImplementationGuides.Single(y => y.Id == implementationGuideId);
this.schema = this.implementationGuide.ImplementationGuideType.GetSimpleSchema();
this.igSettings = new IGSettingsManager(this._tdb, implementationGuideId);
this.templates = (from tid in templateIds
join t in tdb.Templates on tid equals t.Id
select t).Distinct().ToList();
this.templateRelationships = (from tr in this._tdb.ViewTemplateRelationships
join tid in templateIds on tr.ParentTemplateId equals tid
where templateIds.Contains(tr.ChildTemplateId)
select tr)
.Union(from tr in this._tdb.ViewTemplateRelationships
join tid in templateIds on tr.ChildTemplateId equals tid
where templateIds.Contains(tr.ParentTemplateId)
select tr)
.ToList();
this.constraintReferences = (from t in this.templates
join tc in this._tdb.TemplateConstraints on t.Id equals tc.TemplateId
join tcr in this._tdb.TemplateConstraintReferences on tc.Id equals tcr.TemplateConstraintId
join rt in this._tdb.Templates on tcr.ReferenceIdentifier equals rt.Oid
select new ConstraintReference()
{
TemplateConstraintId = tc.Id,
Name = rt.Name,
Identifier = rt.Oid,
Bookmark = rt.Bookmark,
IncludedInIG = this.templates.Contains(rt)
}).ToList();
this.retiredStatus = PublishStatus.GetRetiredStatus(this._tdb);
}
public void TestSimplifiedSchema_eMeasure()
{
SimpleSchema cdaSchema = SimpleSchema.CreateSimpleSchema(
Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(
new ImplementationGuideType()
{
Name = "CDA",
SchemaLocation = "CDA.xsd"
}));
cdaSchema = cdaSchema.GetSchemaFromContext("Observation");
var foundClassCodeAttr = cdaSchema.Children.SingleOrDefault(y => y.Name == "classCode" && y.IsAttribute);
Assert.IsNotNull(foundClassCodeAttr);
var foundCode = cdaSchema.Children.SingleOrDefault(y => y.Name == "code" && !y.IsAttribute);
Assert.IsNotNull(foundCode);
var foundValue = cdaSchema.Children.SingleOrDefault(y => y.Name == "value" && !y.IsAttribute);
Assert.IsNotNull(foundValue);
var foundEntryRelationship = cdaSchema.Children.SingleOrDefault(y => y.Name == "entryRelationship" && !y.IsAttribute);
Assert.IsNotNull(foundEntryRelationship);
var foundObservation = foundEntryRelationship.Children.SingleOrDefault(y => y.Name == "observation" && !y.IsAttribute);
Assert.IsNotNull(foundObservation);
Assert.IsNotNull(cdaSchema);
}
public byte[] Export(DB.IObjectRepository tdb, SimpleSchema schema, ExportFormats format, IGSettingsManager igSettings, List <string> categories, List <DB.Template> templates, bool includeVocabulary, bool returnJson = true)
{
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
switch (format)
{
case ExportFormats.FHIR_Bundle:
ImplementationGuideExporter exporter = new ImplementationGuideExporter(tdb, schema, uri.Scheme, uri.Authority);
fhir_dstu2.Hl7.Fhir.Model.Bundle bundle = exporter.GetImplementationGuides(include: "ImplementationGuide:resource", implementationGuideId: igSettings.ImplementationGuideId);
return(ConvertToBytes(fhir_dstu2.Hl7.Fhir.Serialization.FhirSerializer.SerializeResourceToXml(bundle)));
case ExportFormats.Native_XML:
NativeExporter proprietaryExporter = new NativeExporter(tdb, templates, igSettings, true, categories);
if (returnJson)
{
return(ConvertToBytes(proprietaryExporter.GenerateJSONExport()));
}
else
{
return(ConvertToBytes(proprietaryExporter.GenerateXMLExport()));
}
case ExportFormats.Templates_DSTU_XML:
DecorExporter decorExporter = new DecorExporter(templates, tdb, igSettings.ImplementationGuideId);
return(ConvertToBytes(decorExporter.GenerateXML()));
default:
throw new Exception("Invalid export format for the specified implementation guide type");
}
}
public string Export(DB.IObjectRepository tdb, SimpleSchema schema, ExportFormats format, IGSettingsManager igSettings, List <string> categories, List <DB.Template> templates, bool includeVocabulary, bool returnJson = true)
{
switch (format)
{
case ExportFormats.FHIR:
string export = FHIRExporter.GenerateExport(tdb, templates, igSettings, categories, includeVocabulary);
if (returnJson)
{
fhir_dstu1.Hl7.Fhir.Model.Bundle bundle = fhir_dstu1.Hl7.Fhir.Serialization.FhirParser.ParseBundleFromXml(export);
export = fhir_dstu1.Hl7.Fhir.Serialization.FhirSerializer.SerializeBundleToJson(bundle);
}
return(export);
case ExportFormats.Proprietary:
NativeExporter proprietaryExporter = new NativeExporter(tdb, templates, igSettings, true, categories);
return(proprietaryExporter.GenerateXMLExport());
case ExportFormats.TemplatesDSTU:
DecorExporter decorExporter = new DecorExporter(templates, tdb, igSettings.ImplementationGuideId);
return(decorExporter.GenerateXML());
case ExportFormats.Snapshot:
default:
throw new Exception("Invalid export format for the specified implementation guide type");
}
}
public void MyTestInitialize()
{
this.cdaSchema = SimpleSchema.CreateSimpleSchema(Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(
new ImplementationGuideType()
{
Name = "CDA",
SchemaLocation = "CDA.xsd"
}));
this.eMeasureSchema = SimpleSchema.CreateSimpleSchema(Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(
new ImplementationGuideType()
{
Name = "eMeasure",
SchemaLocation = "schemas/EMeasure.xsd"
}));
this.fhirSchema = SimpleSchema.CreateSimpleSchema(Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(
new ImplementationGuideType()
{
Name = MockObjectRepository.DEFAULT_FHIR_DSTU1_IG_TYPE_NAME,
SchemaLocation = "fhir-all.xsd"
}));
Assert.IsNotNull(this.eMeasureSchema);
Assert.IsNotNull(this.cdaSchema);
Assert.IsNotNull(this.fhirSchema);
}
public void Setup()
{
this.tdb.InitializeCDARepository();
this.ig = this.tdb.FindOrAddImplementationGuide(this.tdb.FindImplementationGuideType("CDA"), "Test IG");
this.mainSchema = this.tdb.FindImplementationGuideType("CDA").GetSimpleSchema();
}
protected AssertionLineBuilder(IObjectRepository tdb, ImplementationGuideType igType, SimpleSchema igTypeSchema, string prefix)
{
this._igTypeSchema = igTypeSchema;
this._tdb = tdb;
this._prefix = prefix;
this._igType = igType;
}
public ConstraintParser(IObjectRepository tdb,
IConstraint constraint,
ImplementationGuideType igType,
SimpleSchema igTypeSchema,
IEnumerable <Template> allTemplates,
string valueSetFile = "voc.xml",
VocabularyOutputType vocabularyOutputType = VocabularyOutputType.Default)
{
this.tdb = tdb;
this.constraint = constraint;
this.valueSetFile = valueSetFile;
this.igType = igType;
this.igTypeSchema = igTypeSchema;
this.allTemplates = allTemplates;
this.igTypePlugin = igType.GetPlugin();
if (!string.IsNullOrEmpty(this.constraint.Cardinality))
{
this.constraintCardinalityType = CardinalityParser.Parse(this.constraint.Cardinality);
}
if (!string.IsNullOrEmpty(this.constraint.Conformance))
{
this.constraintConformanceType = ConformanceParser.Parse(this.constraint.Conformance);
}
this.prefix = igType.SchemaPrefix;
this.vocabularyOutputType = vocabularyOutputType;
}
public void Setup()
{
this.tdb.InitializeCDARepository();
this.ig = this.tdb.FindOrCreateImplementationGuide(this.tdb.FindImplementationGuideType(Constants.IGTypeNames.CDA), "Test IG");
this.mainSchema = this.tdb.FindImplementationGuideType(Constants.IGTypeNames.CDA).GetSimpleSchema();
}
public IEnumerable <SchemaNode> GetSchemaNodes(int implementationGuideId, string parentType = null, bool includeAttributes = true)
{
if (!CheckPoint.Instance.GrantViewImplementationGuide(implementationGuideId))
{
throw new AuthorizationException("You do not have permission to view this implementation guide");
}
ImplementationGuide ig = this.tdb.ImplementationGuides.Single(y => y.Id == implementationGuideId);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, ig.ImplementationGuideType);
List <SimpleSchema.SchemaObject> children;
if (!string.IsNullOrEmpty(parentType))
{
schema = schema.GetSchemaFromContext(parentType);
children = schema.Children;
}
else
{
children = schema.Children[0].Children;
}
var ret = (from s in children
where includeAttributes || !s.IsAttribute
select new SchemaNode()
{
Context = s.IsAttribute ? "@" + s.Name : s.Name,
Conformance = s.Conformance,
Cardinality = s.Cardinality,
DataType = s.DataType,
HasChildren = s.Children.Where(y => includeAttributes || !y.IsAttribute).Count() > 0
});
return(ret);
}
public List <ValidationResult> ValidateTemplate(int templateId)
{
Template template = this.tdb.Templates.Single(y => y.Id == templateId);
SimpleSchema igSchema = template.OwningImplementationGuide.ImplementationGuideType.GetSimpleSchema();
return(ValidateTemplate(template, igSchema));
}
public void MyTestInitialize()
{
this.cdaSchema = SimpleSchema.CreateSimpleSchema(Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(
new ImplementationGuideType()
{
Name = Constants.IGTypeNames.CDA,
SchemaLocation = Constants.IGTypeSchemaLocations.CDA
}));
this.eMeasureSchema = SimpleSchema.CreateSimpleSchema(Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(
new ImplementationGuideType()
{
Name = Constants.IGTypeNames.EMEASURE,
SchemaLocation = "schemas/EMeasure.xsd"
}));
this.hqmfSchema = SimpleSchema.CreateSimpleSchema(Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(
new ImplementationGuideType()
{
Name = Constants.IGTypeNames.HQMF,
SchemaLocation = "schemas/EMeasure.xsd"
}));
Assert.IsNotNull(this.eMeasureSchema);
Assert.IsNotNull(this.cdaSchema);
Assert.IsNotNull(this.hqmfSchema);
}
/// <summary>
/// Initializes a new instance of ImplementationGuideExporter
/// </summary>
/// <param name="tdb">Reference to the database</param>
/// <param name="scheme">The server url's scheme</param>
/// <param name="authority">The server url's authority</param>
public ImplementationGuideExporter(IObjectRepository tdb, SimpleSchema schema, string scheme, string authority)
{
this.tdb = tdb;
this.scheme = scheme;
this.authority = authority;
this.schema = schema;
this.implementationGuideType = LatestHelper.GetImplementationGuideType(this.tdb, true);
}
public void Setup()
{
this.tdb = new MockObjectRepository();
this.tdb.InitializeCDARepository();
this.igType = this.tdb.FindImplementationGuideType(Constants.IGTypeNames.CDA);
this.igTypeSchema = this.igType.GetSimpleSchema();
}
public IHttpActionResult UpdateStructureDefinition(
[FromBody] StructureDefinition strucDef,
[FromUri] string bookmark)
{
Template existingTemplate = this.tdb.Templates.SingleOrDefault(y => y.Bookmark.ToLower().Trim() == bookmark.ToLower().Trim());
// Make sure the profile exists
if (existingTemplate == null)
{
return(CreateErrorResponse(App_GlobalResources.TrifoliaLang.TemplateNotFoundMessageFormat));
}
if (!CheckPoint.Instance.GrantEditTemplate(existingTemplate.Id))
{
throw new UnauthorizedAccessException();
}
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionImporter importer = new StructureDefinitionImporter(this.tdb, uri.Scheme, uri.Authority);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
Template updatedTemplate;
try
{
User author = CheckPoint.Instance.GetUser(this.tdb);
updatedTemplate = importer.Convert(strucDef, existingTemplate, author);
}
catch (Exception ex)
{
return(CreateErrorResponse(ex.Message, OperationOutcome.IssueType.Exception));
}
if (existingTemplate == null)
{
this.tdb.Templates.Add(updatedTemplate);
}
this.tdb.SaveChanges();
string location = string.Format("{0}://{1}/api/FHIR3/StructureDefinition/{2}",
this.Request.RequestUri.Scheme,
this.Request.RequestUri.Authority,
updatedTemplate.Id);
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", location);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, updatedTemplate.ImplementationGuideType);
schema = schema.GetSchemaFromContext(updatedTemplate.PrimaryContextType);
StructureDefinition updatedStrucDef = exporter.Convert(updatedTemplate, schema);
return(Content <Resource>((existingTemplate == null ? HttpStatusCode.Created : HttpStatusCode.OK), updatedStrucDef, headers));
}
private static (Endpoint endpoint, IEnumerable <ISchema> schemas) ReturnsRealEndpoint()
{
var numberSchema = new SimpleSchema(SchemaType.Number);
var stringSchema = new SimpleSchema(SchemaType.String);
var responseSchema = new ClassSchema(
Response,
new Dictionary <string, ISchema>
{
{ StringKey, stringSchema }
},
new List <string>()
);
var requestSchema = new ClassSchema(
Request,
new Dictionary <string, ISchema>
{
{ NumberKey, numberSchema },
{ StringKey, stringSchema },
}, new List <string>()
);
var endpoint = new Endpoint(
OperationId, Path,
EndpointType.Get,
new HashSet <IParameter>
{
new Parameter(
"parameter",
ParameterType.Header,
stringSchema,
false,
false,
false
)
},
new RequestBody(
new Dictionary <string, ISchema>
{
{ ApplicationJson, requestSchema },
},
true),
new[]
{
new HttpResponse(
200,
new Response(new Dictionary <string, ISchema>
{
{ ApplicationJson, responseSchema }
})),
});
return(endpoint, new List <ISchema>
{
numberSchema, stringSchema, requestSchema, responseSchema
});
public IHttpActionResult CreateStructureDefinition(
[FromBody] StructureDefinition strucDef)
{
if (!string.IsNullOrEmpty(strucDef.Id))
{
OperationOutcome error = new OperationOutcome();
error.Issue.Add(new OperationOutcome.IssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Error,
Diagnostics = App_GlobalResources.TrifoliaLang.CreateFHIR2TemplateFailedDuplicateId
});
return(Content <OperationOutcome>(HttpStatusCode.BadRequest, error));
}
var foundProfile = this.tdb.Templates.SingleOrDefault(y => y.Oid == strucDef.Url);
if (foundProfile != null)
{
OperationOutcome oo = new OperationOutcome()
{
Issue = new List <OperationOutcome.IssueComponent> {
new OperationOutcome.IssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Error,
Code = OperationOutcome.IssueType.Duplicate,
Diagnostics = "A StructureDefinition with the same url already exists. To update, use PUT."
}
}
};
return(Content <OperationOutcome>(HttpStatusCode.Created, oo));
}
var template = CreateTemplate(strucDef);
this.tdb.SaveChanges();
string location = string.Format("{0}://{1}/api/FHIR3/StructureDefinition/{2}",
this.Request.RequestUri.Scheme,
this.Request.RequestUri.Authority,
template.Id);
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", location);
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
StructureDefinition newStrucDef = exporter.Convert(template, schema);
return(Content <StructureDefinition>(HttpStatusCode.Created, newStrucDef, headers));
}
public IHttpActionResult GetTemplate(
[FromUri] string templateId,
[FromUri(Name = "_summary")] SummaryType?summary = null)
{
Template template = this.tdb.Templates.SingleOrDefault(y => y.Oid == this.Request.RequestUri.AbsoluteUri || y.Id.ToString() == templateId);
// Return an operation outcome indicating that the profile was not found
if (template == null)
{
OperationOutcome oo = new OperationOutcome();
oo.Issue.Add(new OperationOutcome.OperationOutcomeIssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Fatal,
Diagnostics = "Profile was not found"
});
return(Content <OperationOutcome>(HttpStatusCode.NotFound, oo));
}
// Redirect the user to the Trifolia web interface if an acceptable format is text/html, and no format or summary was specified
if (Request.Headers.Accept.Any(y => y.MediaType == "text/html") && summary == null)
{
Dictionary <string, string> headers = new Dictionary <string, string>();
headers.Add("Location", Request.RequestUri.Scheme + "://" + Request.RequestUri.Authority + "/TemplateManagement/View/Id/" + template.Id);
OperationOutcome redirectOutcome = new OperationOutcome();
redirectOutcome.Issue.Add(new OperationOutcome.OperationOutcomeIssueComponent()
{
Severity = OperationOutcome.IssueSeverity.Information,
Diagnostics = "Detecting browser-based request, redirecting to Trifolia web interface."
});
return(Content <OperationOutcome>(HttpStatusCode.Redirect, redirectOutcome, headers));
}
if (template.TemplateType.ImplementationGuideType != this.implementationGuideType)
{
throw new FormatException(App_GlobalResources.TrifoliaLang.TemplateNotFHIRSTU3);
}
if (!CheckPoint.Instance.GrantViewTemplate(template.Id))
{
throw new UnauthorizedAccessException();
}
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
StructureDefinitionExporter exporter = new StructureDefinitionExporter(this.tdb, uri.Scheme, uri.Authority);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current, template.ImplementationGuideType);
schema = schema.GetSchemaFromContext(template.PrimaryContextType);
StructureDefinition strucDef = exporter.Convert(template, schema, summary);
return(Content <StructureDefinition>(HttpStatusCode.OK, strucDef));
}
public BuildExporter(IObjectRepository tdb, int implementationGuideId, IEnumerable <Template> templates = null)
{
this.tdb = tdb;
this.ig = this.tdb.ImplementationGuides.SingleOrDefault(y => y.Id == implementationGuideId);
this.templates = templates ?? this.ig.GetRecursiveTemplates(this.tdb);
this.schema = this.ig.ImplementationGuideType.GetSimpleSchema();
this.igName = this.ig.Name.Replace(" ", "_");
this.controlFileName = this.igName + ".json";
}
public GreenTransformGenerator(IObjectRepository tdb, Dictionary <int, int> greenTemplates, long templateId)
: this(tdb)
{
this.rootTemplate = tdb.Templates.Single(y => y.Id == templateId);
this.greenTemplates = greenTemplates;
this.schemaNamespace = this.rootTemplate.ImplementationGuideType.SchemaURI;
this.simpleSchema =
SimpleSchema.CreateSimpleSchema(
Helper.GetIGSimplifiedSchemaLocation(this.rootTemplate.ImplementationGuideType));
TransformHelper.InitializeTransform(this.transformDoc, this.schemaNamespace);
}
public void GetSchemaFromContext()
{
SimpleSchema observationSchema = this.cdaSchema.GetSchemaFromContext("Observation");
Assert.IsNotNull(observationSchema, "Expected GetSchemaFromContext to return a non-null value for Observation.");
Assert.AreNotEqual(0, observationSchema.Children, "Expected the returned schema to have children.");
List <SimpleSchema.SchemaObject> observationIds = observationSchema.Children.Where(y => y.Name == "id" && y.IsAttribute == false).ToList();
Assert.AreNotEqual(0, observationIds.Count, "Expected the returned schema to have a child id element.");
Assert.AreEqual(1, observationIds.Count, "Expected the returned schema to have only one child id element.");
}
public HttpResponseMessage GetImplementationGuide(
int implementationGuideId,
[FromUri(Name = "_format")] string format = null,
[FromUri(Name = "_summary")] fhir_stu3.Hl7.Fhir.Rest.SummaryType?summary = null)
{
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
var implementationGuide = this.tdb.ImplementationGuides.Single(y => y.Id == implementationGuideId);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, implementationGuide.ImplementationGuideType);
ImplementationGuideExporter exporter = new ImplementationGuideExporter(this.tdb, schema, uri.Scheme, uri.Authority);
FhirImplementationGuide response = exporter.Convert(implementationGuide, summary);
return(Shared.GetResponseMessage(this.Request, format, response));
}
public TemplateContextBuilder(IObjectRepository tdb, ImplementationGuideType igType, SimpleSchema igTypeSchema, string prefix = null)
{
this.tdb = tdb;
this.igType = igType;
this.plugin = this.igType.GetPlugin();
this.igTypeSchema = igTypeSchema;
this.prefix = !string.IsNullOrEmpty(prefix) ? prefix : igType.SchemaPrefix;
if (!string.IsNullOrEmpty(this.prefix) && this.prefix.EndsWith(":"))
{
this.prefix = this.prefix.Substring(0, this.prefix.Length - 1);
}
}
public virtual List <ValidationResult> ValidateTemplate(Template template, SimpleSchema igSchema, IEnumerable <Template> allContainedTemplates = null)
{
SimpleSchema templateSchema = template.GetSchema(igSchema);
List <ValidationResult> results = new List <ValidationResult>();
var igType = template.ImplementationGuideType;
if (igType.SchemaURI == ImplementationGuideType.FHIR_NS)
{
if (!template.IsIdentifierURL())
{
results.Add(ValidationResult.CreateResult(ValidationLevels.Error, "FHIR profiles should use HTTP(S) identifiers."));
}
if (template.Oid.IndexOf("_") >= 0)
{
results.Add(ValidationResult.CreateResult(ValidationLevels.Warning, "FHIR profile's long identifier should use - (dash) instead of _ (underscore)"));
}
if (template.Bookmark.IndexOf("_") >= 0)
{
results.Add(ValidationResult.CreateResult(ValidationLevels.Warning, "FHIR profile's short identifier should use - (dash) instead of _ (underscore)"));
}
if (template.IsIdentifierURL() && !template.Oid.EndsWith(template.Bookmark))
{
results.Add(ValidationResult.CreateResult(ValidationLevels.Error, "FHIR profile's long identifier should end with the short identifier"));
}
}
XmlDocument tempDoc = new XmlDocument();
XPathNavigator xpathNavigator = tempDoc.CreateNavigator();
if (templateSchema == null)
{
results.Add(
ValidationResult.CreateResult(ValidationLevels.Error, "Template context is not found within the schema"));
}
else
{
List <TemplateConstraint> rootConstraints = template.ChildConstraints.Where(y => y.ParentConstraintId == null).ToList();
rootConstraints.ForEach(y =>
{
// The first child in the schema is the complex type itself
ValidateTemplateConstraint(template, xpathNavigator, results, templateSchema, templateSchema.Children, y, allContainedTemplates);
});
}
return(results);
}
public HttpResponseMessage GetImplementationGuides(
[FromUri(Name = "_format")] string format = null,
[FromUri(Name = "_summary")] fhir_stu3.Hl7.Fhir.Rest.SummaryType?summary = null,
[FromUri(Name = "_include")] string include = null,
[FromUri(Name = "_id")] int?implementationGuideId = null,
[FromUri(Name = "name")] string name = null)
{
var uri = HttpContext.Current != null && HttpContext.Current.Request != null ? HttpContext.Current.Request.Url : new Uri(AppSettings.DefaultBaseUrl);
SimpleSchema schema = SimplifiedSchemaContext.GetSimplifiedSchema(HttpContext.Current.Application, this.implementationGuideType);
ImplementationGuideExporter exporter = new ImplementationGuideExporter(this.tdb, schema, uri.Scheme, uri.Authority);
var bundle = exporter.GetImplementationGuides(summary, include, implementationGuideId, name);
return(Shared.GetResponseMessage(this.Request, format, bundle));
}
public void TestObservationDataTypes()
{
SimpleSchema observationSchema = this.cdaSchema.GetSchemaFromContext("Observation");
var children = observationSchema.Children;
Assert.AreEqual(children[0].Name, "nullFlavor");
Assert.AreEqual(children[0].IsAttribute, true);
Assert.AreEqual(children[1].Name, "classCode");
Assert.AreEqual(children[1].IsAttribute, true);
Assert.AreEqual(children[2].Name, "moodCode");
Assert.AreEqual(children[2].IsAttribute, true);
Assert.AreEqual(children[3].Name, "negationInd");
Assert.AreEqual(children[3].IsAttribute, true);
Assert.AreEqual(children[4].Name, "realmCode");
Assert.AreEqual(children[4].IsAttribute, false);
Assert.AreEqual(children[5].Name, "typeId");
Assert.AreEqual(children[5].IsAttribute, false);
Assert.AreEqual(children[6].Name, "templateId");
Assert.AreEqual(children[6].IsAttribute, false);
Assert.AreEqual(children[7].Name, "id");
Assert.AreEqual(children[7].IsAttribute, false);
Assert.AreEqual(children[8].Name, "code");
Assert.AreEqual(children[8].IsAttribute, false);
Assert.AreEqual(children[9].Name, "derivationExpr");
Assert.AreEqual(children[10].Name, "text");
Assert.AreEqual(children[11].Name, "statusCode");
Assert.AreEqual(children[12].Name, "effectiveTime");
Assert.AreEqual(children[13].Name, "priorityCode");
Assert.AreEqual(children[14].Name, "repeatNumber");
Assert.AreEqual(children[15].Name, "languageCode");
Assert.AreEqual(children[16].Name, "value");
Assert.AreEqual(children[17].Name, "interpretationCode");
Assert.AreEqual(children[18].Name, "methodCode");
Assert.AreEqual(children[18].DataType, "CE");
Assert.AreEqual(children[19].Name, "targetSiteCode");
Assert.AreEqual(children[19].DataType, "CD");
Assert.AreEqual(children[20].Name, "subject");
Assert.AreEqual(children[21].Name, "specimen");
Assert.AreEqual(children[22].Name, "performer");
Assert.AreEqual(children[23].Name, "author");
Assert.AreEqual(children[24].Name, "informant");
Assert.AreEqual(children[25].Name, "participant");
Assert.AreEqual(children[26].Name, "entryRelationship");
Assert.AreEqual(children[27].Name, "reference");
Assert.AreEqual(children[28].Name, "precondition");
Assert.AreEqual(children[29].Name, "sdtc:precondition2");
Assert.AreEqual(children[30].Name, "referenceRange");
Assert.AreEqual(children[31].Name, "sdtc:inFulfillmentOf1");
}
public void AssertStaticSimple()
{
var env = new ConsoleEnvironment(0, verbose: true);
var schema = new SimpleSchema(env,
P("hello", TextType.Instance),
P("my", new VectorType(NumberType.I8, 5)),
P("friend", new KeyType(DataKind.U4, 0, 3)));
var view = new EmptyDataView(env, schema);
view.AssertStatic(env, c => (
my: c.I8.Vector,
friend: c.KeyU4.NoValue.Scalar,
hello: c.Text.Scalar
));
}
public BuildExporter(IObjectRepository tdb, int implementationGuideId, IEnumerable <Template> templates = null, bool jsonFormat = false)
{
this.tdb = tdb;
this.ig = this.tdb.ImplementationGuides.SingleOrDefault(y => y.Id == implementationGuideId);
this.igTypePlugin = this.ig.ImplementationGuideType.GetPlugin();
this.templates = templates ?? this.ig.GetRecursiveTemplates(this.tdb);
this.schema = this.ig.ImplementationGuideType.GetSimpleSchema();
this.igName = this.ig.Name.Replace(" ", "_");
this.controlFileName = "ig.json";
this.JsonFormat = jsonFormat;
this.dataExamples = new DataExamples();
}
public static SimpleSchema GetSimplifiedSchema(HttpApplicationState application, ImplementationGuideType igType)
{
if (application != null && application[igType.Name] != null)
{
return((SimpleSchema)application[igType.Name]);
}
SimpleSchema newSimplifiedSchema =
SimpleSchema.CreateSimpleSchema(Trifolia.Shared.Helper.GetIGSimplifiedSchemaLocation(igType));
if (application != null)
{
application.Add(igType.Name, newSimplifiedSchema);
}
return(newSimplifiedSchema);
}
protected override void ProcessRecord()
{
ImplementationGuide ig = this.tdb.ImplementationGuides.Single(y => y.Id == this.ImplementationGuideId);
SimpleSchema schema = ig.ImplementationGuideType.GetSimpleSchema();
IGSettingsManager igSettings = new IGSettingsManager(this.tdb, ig.Id);
var templates = ig.GetRecursiveTemplates(this.tdb);
string export = ig.ImplementationGuideType.GetPlugin().Export(this.tdb, schema, this.Format, igSettings, null, templates, this.IncludeVocab, this.ReturnJson);
if (!string.IsNullOrEmpty(this.OutputFileName))
{
File.WriteAllText(this.OutputFileName, export);
}
else
{
this.WriteObject(export);
}
}
