/// <summary>Clears the transferring biomass amounts.</summary>
private void ClearBiomassFlows()
{
Allocated.Clear();
Senesced.Clear();
Detached.Clear();
Removed.Clear();
}
/// <summary>Clears some variables.</summary>
virtual protected void DoDailyCleanup()
{
Allocated.Clear();
Senesced.Clear();
Detached.Clear();
Removed.Clear();
}
protected void OnDoActualPlantGrowth(object sender, EventArgs e)
{
if (parentPlant.IsAlive)
{
// Do senescence
double senescedFrac = senescenceRate.Value();
if (Live.Wt * (1.0 - senescedFrac) < BiomassToleranceValue)
{
senescedFrac = 1.0; // remaining amount too small, senesce all
}
Biomass Loss = Live * senescedFrac;
Live.Subtract(Loss);
Dead.Add(Loss);
Senesced.Add(Loss);
// Do detachment
double detachedFrac = detachmentRateFunction.Value();
if (Dead.Wt * (1.0 - detachedFrac) < BiomassToleranceValue)
{
detachedFrac = 1.0; // remaining amount too small, detach all
}
Biomass detaching = Dead * detachedFrac;
Dead.Multiply(1.0 - detachedFrac);
if (detaching.Wt > 0.0)
{
Detached.Add(detaching);
surfaceOrganicMatter.Add(detaching.Wt * 10, detaching.N * 10, 0, parentPlant.CropType, Name);
}
// Do maintenance respiration
MaintenanceRespiration = 0;
MaintenanceRespiration += Live.MetabolicWt * maintenanceRespirationFunction.Value();
MaintenanceRespiration += Live.StorageWt * maintenanceRespirationFunction.Value();
}
}
protected void OnDoDailyInitialisation(object sender, EventArgs e)
{
if (Plant.IsAlive)
{
Allocated.Clear();
Senesced.Clear();
Detached.Clear();
Removed.Clear();
}
}
/// <summary>Clears this instance.</summary>
protected virtual void Clear()
{
Live = new Biomass();
Dead = new Biomass();
DMSupply.Clear();
NSupply.Clear();
DMDemand.Clear();
NDemand.Clear();
potentialDMAllocation.Clear();
Allocated.Clear();
Senesced.Clear();
Detached.Clear();
Removed.Clear();
}
/// <summary>Clears this instance.</summary>
private void Clear()
{
Live = new Biomass();
Dead = new Biomass();
DMSupply.Clear();
NSupply.Clear();
DMDemand.Clear();
NDemand.Clear();
potentialDMAllocation.Clear();
Allocated.Clear();
Senesced.Clear();
Detached.Clear();
Removed.Clear();
Height = 0;
LAI = 0;
LeafInitialised = false;
}
/// <summary>Sets the n allocation.</summary>
/// <param name="nitrogen">The nitrogen allocation</param>
public virtual void SetNitrogenAllocation(BiomassAllocationType nitrogen)
{
Live.StructuralN += nitrogen.Structural;
Live.StorageN += nitrogen.Storage;
Live.MetabolicN += nitrogen.Metabolic;
Allocated.StructuralN += nitrogen.Structural;
Allocated.StorageN += nitrogen.Storage;
Allocated.MetabolicN += nitrogen.Metabolic;
RetranslocateNitrogen.Allocate(this, nitrogen);
// Reallocation
double senescedFrac = SenescenceRate.Value();
if (StartLive.Wt * (1.0 - senescedFrac) < BiomassToleranceValue)
{
senescedFrac = 1.0; // remaining amount too small, senesce all
}
if (senescedFrac > 0 && StartLive.Wt > 0 && Name == "Shell")
{
}
if (MathUtilities.IsGreaterThan(nitrogen.Reallocation, StartLive.StorageN + StartLive.MetabolicN))
{
throw new Exception("N reallocation exceeds storage + metabolic nitrogen in organ: " + Name);
}
double StorageNReallocation = Math.Min(nitrogen.Reallocation, StartLive.StorageN * senescedFrac * nReallocationFactor.Value());
Live.StorageN -= StorageNReallocation;
Live.MetabolicN -= (nitrogen.Reallocation - StorageNReallocation);
Allocated.StorageN -= nitrogen.Reallocation;
// now move the remaining senescing material to the dead pool
Biomass Loss = new Biomass();
Loss.StructuralN = StartLive.StructuralN * senescedFrac;
Loss.StorageN = StartLive.StorageN * senescedFrac - StorageNReallocation;
Loss.MetabolicN = StartLive.MetabolicN * senescedFrac - (nitrogen.Reallocation - StorageNReallocation);
Loss.StructuralWt = StartLive.StructuralWt * senescedFrac;
Loss.MetabolicWt = StartLive.MetabolicWt * senescedFrac;
Loss.StorageWt = StartLive.StorageWt * senescedFrac;
Live.Subtract(Loss);
Dead.Add(Loss);
Senesced.Add(Loss);
}
/// <summary>Clears this instance.</summary>
protected virtual void Clear()
{
Live = new Biomass();
Dead = new Biomass();
dryMatterSupply.Clear();
nitrogenSupply.Clear();
dryMatterDemand.Clear();
nitrogenDemand.Clear();
potentialDMAllocation.Clear();
potentialDMAllocating = 0.0;
potentialStructuralDMAllocation = 0.0;
potentialMetabolicDMAllocation = 0.0;
Allocated.Clear();
Senesced.Clear();
Detached.Clear();
Removed.Clear();
}
/// <summary>Clears this instance.</summary>
protected virtual void Clear()
{
Live.Clear();
Dead.Clear();
DMRetranslocationSupply = 0.0;
DMReallocationSupply = 0.0;
NRetranslocationSupply = 0.0;
NReallocationSupply = 0.0;
PotentialDMAllocation = 0.0;
PotentialStructuralDMAllocation = 0.0;
PotentialMetabolicDMAllocation = 0.0;
StructuralDMDemand = 0.0;
StorageDMDemand = 0.0;
Allocated.Clear();
Senesced.Clear();
Detached.Clear();
Removed.Clear();
}
