Example #1
0
        public void ValidateSAMFormatterFormatString()
        {
            string filePath = Utility._xmlUtil.GetTextValue(
                Constants.SamFormatterFileNode,
                Constants.FilePathNode);
            ISequenceAlignmentParser   parser    = new SAMParser();
            IList <ISequenceAlignment> alignment = parser.Parse(filePath);

            SAMFormatter formatter = new SAMFormatter();
            string       writer    = formatter.FormatString(alignment[0]);

            Assert.AreEqual(writer, Constants.FormatterString);
        }
Example #2
0
        public void ValidateSAMFormatterFormatString()
        {
            string filePath = utilityObj.xmlUtil.GetTextValue(
                Constants.SamFormatterFileNode,
                Constants.FilePathNode).TestDir();
            ISequenceAlignmentParser   parser    = new SAMParser();
            IList <ISequenceAlignment> alignment = parser.Parse(filePath).ToList();

            SAMFormatter formatter = new SAMFormatter();
            string       writer    = formatter.FormatString(alignment[0]);

            Assert.AreEqual(writer, Constants.FormatterString.Replace("\r\n", Environment.NewLine));
        }