IEnumerator InitScene(RequestPDB requestPDB)
{
string pdbID = MainMenu.pdbID;
//StartCoroutine(requestPDB.LoadPDBWWW(UIData.server_url+"Scenes/1KX2/1KX2.pdb"));
WWWForm form = new WWWForm();
form.AddField("pdbID", pdbID);
WWW www = new WWW(UIData.server_url + "FetchPDB.php", form);
Debug.Log(www.url);
while (!www.isDone)
{
fetch_progress = www.progress;
yield return(new WaitForEndOfFrame());
}
Debug.Log(www.error);
fetch_progress = 1.0f;
StartCoroutine(requestPDB.LoadPDBWWW(UIData.server_url + "pdb_files/" + pdbID + ".pdb"));
while (!RequestPDB.isDone)
{
pdb_progress = requestPDB.progress;
yield return(new WaitForEndOfFrame());
}
Debug.Log(www.error);
pdb_progress = 1.0f;
UIData.atomtype = UIData.AtomType.particleball;
UIData.bondtype = UIData.BondType.nobond;
GUIMoleculeController.showOpenMenu = false;
GUIMoleculeController.showAtomMenu = true;
SendMessage("Display", SendMessageOptions.DontRequireReceiver);
}
IEnumerator InitScene(object[] stuff)
{
//http://www.shaman.ibpc.fr/umolweb/Scenes/1KX2/1KX2.pdb
// StartCoroutine(requestPDB.LoadPDBWWW("http://www.shaman.ibpc.fr/umolweb/Scenes/1KX2/1KX2.pdb"));
// StartCoroutine(requestPDB.LoadPDBWWW("http://imyjimmy.com/pdb-files/5l1b.pdb")); //5l1b //1l2y
Material mat = (Material)stuff[0];
RequestPDB requestPDB = (RequestPDB)stuff[1];
//5l1b_short
// StartCoroutine(requestPDB.LoadPDBWWW("file:///C://Users/imyjimmy-vr/Documents/vr-projects/gria2-viewer/Assets/StreamingAssets/Gria2Data/5l1b_short.pdb")); //5l1b //1l2y
StartCoroutine(requestPDB.LoadPDBWWW("file:///C://Users/imyjimmy-vr/Documents/vr-projects/gria2-viewer/Assets/StreamingAssets/CACNB2Data/5v2p.pdb")); //5l1b //1l2y
while (!RequestPDB.isDone)
{
pdb_progress = requestPDB.progress;
// Debug.Log(pdb_progress);
yield return(new WaitForEndOfFrame());
}
pdb_progress = 1.0f;
//requestPDB.LoadPDBResource("1KX2");
// UIData.atomtype = UIData.AtomType.hyperball;
// UIData.bondtype = UIData.BondType.hyperstick;
UIData.atomtype = UIData.AtomType.noatom;
UIData.bondtype = UIData.BondType.nobond;
UIData.secondarystruct = true;
//trying it out
hlResMat = mat;
ribbons = new Ribbons();
List <string> residueNames = Molecule.Model.MoleculeModel.atomsResnamelist;
ribbons.CreateRibbons();
// toggle_NA_HIDE = !toggle_NA_HIDE; //GUIMoleculeController.toggle_NA_HIDE
LoadBox = GameObject.Find("LoadBox");
GameObject[] objs = GameObject.FindGameObjectsWithTag("RibbonObj");
GUIMoleculeController.showOpenMenu = false;
GUIMoleculeController.showAtomMenu = false;
GUIMoleculeController.globalRadius = 0.3f;
GUIMoleculeController.shrink = 0.00001f; //100.00f; //0.000001f;
GUIMoleculeController.linkScale = 0.4f;
foreach (GameObject o in objs)
{
o.transform.parent = LoadBox.transform;
o.transform.localScale = LoadBox.transform.localScale;
o.transform.localPosition = LoadBox.transform.localPosition;
}
SendMessage("Display", SendMessageOptions.DontRequireReceiver);
}
IEnumerator InitScene(RequestPDB requestPDB)
{
StartCoroutine(requestPDB.LoadXGMML(UIData.server_url + "Scenes/Network/galFiltered.sif.xgmml"));
while (!RequestPDB.isDone)
{
xml_progress = requestPDB.progress;
yield return(new WaitForEndOfFrame());
}
xml_progress = 1.0f;
GUIDisplay.file_extension = "xgmml";
UIData.atomtype = UIData.AtomType.hyperball;
UIData.bondtype = UIData.BondType.hyperstick;
GUIMoleculeController.globalRadius = 0.7f;
GUIMoleculeController.shrink = 0.0001f;
GUIMoleculeController.linkScale = 0.3f;
GUIMoleculeController.showOpenMenu = false;
GUIMoleculeController.showAtomMenu = true;
SendMessage("Display", SendMessageOptions.DontRequireReceiver);
}
IEnumerator InitScene(RequestPDB requestPDB)
{
StartCoroutine(requestPDB.LoadPDBWWW(UIData.server_url + "Scenes/1KX2/1KX2.pdb"));
while (!RequestPDB.isDone)
{
pdb_progress = requestPDB.progress;
Debug.Log(pdb_progress);
yield return(new WaitForEndOfFrame());
}
pdb_progress = 1.0f;
//requestPDB.LoadPDBResource("1KX2");
UIData.atomtype = UIData.AtomType.hyperball;
UIData.bondtype = UIData.BondType.hyperstick;
GUIMoleculeController.showOpenMenu = false;
GUIMoleculeController.showAtomMenu = false;
GUIMoleculeController.globalRadius = 0.3f;
GUIMoleculeController.shrink = 0.0001f;
GUIMoleculeController.linkScale = 0.4f;
SendMessage("Display", SendMessageOptions.DontRequireReceiver);
}
IEnumerator InitScene(RequestPDB requestPDB)
{
//print(Application.dataPath);
//StartCoroutine(requestPDB.LoadPDBWWW("file://"+Application.dataPath+"/../Scenes/RNA/17RA_gg.pdb"));
StartCoroutine(requestPDB.LoadPDBWWW("file://" + Application.dataPath + "/../share/17RA_gg.pdb"));
while (!RequestPDB.isDone)
{
pdb_progress = requestPDB.progress;
Debug.Log(pdb_progress);
yield return(new WaitForEndOfFrame());
}
pdb_progress = 1.0f;
//requestPDB.LoadPDBResource("1KX2");
UIData.ffType = UIData.FFType.HiRERNA;
UIData.atomtype = UIData.AtomType.hyperball;
UIData.bondtype = UIData.BondType.hyperstick;
GUIMoleculeController.shrink = 0.8f;
GUIMoleculeController.showOpenMenu = false;
GUIMoleculeController.showAtomMenu = true;
SendMessage("Display", SendMessageOptions.DontRequireReceiver);
}
public static void CreateMolecule(TextReader sr)
{
List <float[]> alist = new List <float[]>();
List <float[]> calist = new List <float[]>();
List <float> BFactorList = new List <float>();
List <string> resnamelist = new List <string>();
List <string> atomsNameList = new List <string>();
List <string> caChainlist = new List <string>();
List <AtomModel> typelist = new List <AtomModel>();
List <string> chainlist = new List <string>();
List <Color> colorList = new List <Color>();
List <float[]> sshelixlist = new List <float[]> ();
List <float[]> sssheetlist = new List <float[]> ();
RequestPDB.ReadPDB(sr, alist, calist, BFactorList, resnamelist, atomsNameList, caChainlist, typelist, chainlist, colorList, sshelixlist, sssheetlist);
BuildMoleculeComponents();
CreateSplines();
CreateResidues();
CreateResiduesSugar2();
if (UIData.loadHireRNA)
{
BuildHireRnaHydrogenBondsStructures();
}
if (GUIDisplay.pdbID == "3EI0")
{
UIData.isGLIC = true;
}
UIData.isParticlesInitialized = false; // new file, new particle system needed
MoleculeModel.networkLoaded = false; // protein loaded, network removed if present
}
IEnumerator InitScene(RequestPDB requestPDB)
{
StartCoroutine(requestPDB.LoadPDBWWW(UIData.server_url + "Scenes/fieldlines/fieldline.pdb"));
while (!RequestPDB.isDone)
{
pdb_progress = requestPDB.progress;
Debug.Log(pdb_progress);
yield return(new WaitForEndOfFrame());
}
pdb_progress = 1.0f;
UIData.atomtype = UIData.AtomType.particleball;
UIData.bondtype = UIData.BondType.nobond;
GUIMoleculeController.showOpenMenu = false;
GUIMoleculeController.showAtomMenu = true;
SendMessage("Display", SendMessageOptions.DontRequireReceiver);
StartCoroutine(requestPDB.LoadJsonWWW(UIData.server_url + "Scenes/fieldlines/fieldline.json", MoleculeModel.Offset));
while (!RequestPDB.isDone)
{
json_progress = requestPDB.progress;
yield return(new WaitForEndOfFrame());
}
json_progress = 1.0f;
MoleculeModel.fieldLineFileExists = true;
GUIMoleculeController.showFieldLines = true;
FieldLineStyle.DisplayFieldLine();
StartCoroutine(requestPDB.LoadOBJWWW(UIData.server_url + "Scenes/fieldlines/fieldline.obj"));
while (!RequestPDB.isDone)
{
obj_progress = requestPDB.progress;
yield return(new WaitForEndOfFrame());
}
obj_progress = 1.0f;
MoleculeModel.surfaceFileExists = true;
GUIMoleculeController.modif = true;
}