private async Task CreateLinksAsync(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto mappedReportInstance)
{
if (reportInstanceFromRepo == null)
{
throw new ArgumentNullException(nameof(reportInstanceFromRepo));
}
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateReportInstanceResourceUri(reportInstanceFromRepo.WorkFlow.WorkFlowGuid, mappedReportInstance.Id), "self", "GET"));
switch (reportInstanceFromRepo.CurrentActivity.QualifiedName)
{
case "Confirm Report Data":
CreateLinksForConfirmationStep(reportInstanceFromRepo, mappedReportInstance);
break;
case "Set MedDRA and Causality":
await CreateLinksForTerminologyStepAsync(reportInstanceFromRepo, mappedReportInstance);
break;
case "Extract E2B":
await CreateLinksForE2BStepAsync(reportInstanceFromRepo, mappedReportInstance);
break;
default:
break;
}
var validRoles = new string[] { "RegClerk", "DataCap", "Clinician" };
if (reportInstanceFromRepo.WorkFlow.Description == "New Active Surveilliance Report")
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUri("Patient", reportInstanceFromRepo.Id), "viewpatient", "GET"));
}
if (reportInstanceFromRepo.WorkFlow.Description == "New Spontaneous Surveilliance Report")
{
var datasetInstance = _datasetInstanceRepository.Get(di => di.DatasetInstanceGuid == reportInstanceFromRepo.ContextGuid);
if (datasetInstance != null)
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateUpdateDatasetInstanceResourceUri(
datasetInstance.Dataset.Id, datasetInstance.Id), "updatespont", "PUT"));
}
}
}
private async Task CustomMapAsync(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto mappedReportInstanceDto)
{
if (reportInstanceFromRepo == null)
{
throw new ArgumentNullException(nameof(reportInstanceFromRepo));
}
await MapIdsForReportInstanceAsync(reportInstanceFromRepo, mappedReportInstanceDto);
await MapE2BActivitiesForReportInstanceAsync(reportInstanceFromRepo, mappedReportInstanceDto);
if (reportInstanceFromRepo.WorkFlow.Description == "New Spontaneous Surveilliance Report")
{
await MapSpontaneousInstanceForReportInstanceAsync(reportInstanceFromRepo.ContextGuid, mappedReportInstanceDto);
}
foreach (var medication in mappedReportInstanceDto.Medications)
{
await CustomReportInstanceMedicationMapAsync(reportInstanceFromRepo, medication);
}
}
private async Task CreateLinksForE2BStepAsync(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto mappedReportInstance)
{
if (reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description == "NOTGENERATED" ||
reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description == "E2BSUBMITTED")
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("CreateE2BInstance",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, reportInstanceFromRepo.Id), "createe2b", "PUT"));
}
if (reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description == "E2BINITIATED")
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceStatus",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, reportInstanceFromRepo.Id), "preparereporte2b", "PUT"));
var evt = reportInstanceFromRepo.CurrentActivity.ExecutionEvents
.OrderByDescending(ee => ee.EventDateTime)
.First(ee => ee.ExecutionStatus.Id == reportInstanceFromRepo.CurrentActivity.CurrentStatus.Id);
var tag = (reportInstanceFromRepo.WorkFlow.Description == "New Active Surveilliance Report") ? "Active" : "Spontaneous";
var datasetInstance = await _datasetInstanceRepository.GetAsync(di => di.Tag == tag && di.ContextId == evt.Id);
if (datasetInstance != null)
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateUpdateDatasetInstanceResourceUri(datasetInstance.Dataset.Id, datasetInstance.Id), "updatee2b", "PUT"));
}
}
if (reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description == "E2BGENERATED")
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceStatus",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, reportInstanceFromRepo.Id), "confirmsubmissione2b", "PUT"));
var executionEvent = reportInstanceFromRepo.CurrentActivity.ExecutionEvents
.OrderByDescending(ee => ee.EventDateTime)
.First(ee => ee.ExecutionStatus.Description == "E2BGENERATED");
if (executionEvent != null)
{
var e2bAttachment = executionEvent.Attachments.SingleOrDefault(att => att.Description == "E2b");
if (e2bAttachment != null)
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateDownloadActivitySingleAttachmentResourceUri(
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, reportInstanceFromRepo.Id, executionEvent.Id, e2bAttachment.Id), "downloadxml", "GET"));
}
}
}
}
private async Task CreateLinksForTerminologyStepAsync(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto mappedReportInstance)
{
var config = await _configRepository.GetAsync(c => c.ConfigType == ConfigType.AssessmentScale);
if (config == null)
{
return;
}
;
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceTerminology",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, mappedReportInstance.Id), "setmeddra", "PUT"));
if (reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description != "NOTSET")
{
// ConfigType.AssessmentScale
if (config.ConfigValue == "Both Scales" || config.ConfigValue == "WHO Scale")
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceStatus",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, reportInstanceFromRepo.Id), "whocausalityset", "PUT"));
}
if (config.ConfigValue == "Both Scales" || config.ConfigValue == "Naranjo Scale")
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceStatus",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, reportInstanceFromRepo.Id), "naranjocausalityset", "PUT"));
}
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceStatus",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, reportInstanceFromRepo.Id), "causalityset", "PUT"));
}
}
private void CreateLinksForConfirmationStep(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto mappedReportInstance)
{
if (reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description == "UNCONFIRMED")
{
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceStatus",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, mappedReportInstance.Id), "confirm", "PUT"));
mappedReportInstance.Links.Add(new LinkDto(_linkGeneratorService.CreateResourceUriForReportInstance("UpdateReportInstanceStatus",
reportInstanceFromRepo.WorkFlow.WorkFlowGuid, mappedReportInstance.Id), "delete", "PUT"));
}
}
private async Task MapSpontaneousInstanceForReportInstanceAsync(Guid contextGuid, ReportInstanceDetailDto dto)
{
var datasetInstanceFromRepo = await _datasetInstanceRepository.GetAsync(di => di.DatasetInstanceGuid == contextGuid, new string[] { "Dataset" });
if (datasetInstanceFromRepo != null)
{
dto.SpontaneousInstance = new DatasetInstanceDto()
{
DatasetId = datasetInstanceFromRepo.Dataset.Id,
DatasetInstanceId = datasetInstanceFromRepo.Id
};
}
}
private void MapE2BAttachmentForReportInstance(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto dto)
{
var latestE2BGeneratedExecutionEvent = reportInstanceFromRepo.CurrentActivity.GetLatestE2BGeneratedEvent();
if (latestE2BGeneratedExecutionEvent != null)
{
var e2bAttachment = latestE2BGeneratedExecutionEvent.Attachments.SingleOrDefault(att => att.Description == "E2b");
if (e2bAttachment != null)
{
dto.ActivityExecutionStatusEventId = latestE2BGeneratedExecutionEvent.Id;
dto.AttachmentId = e2bAttachment.Id;
}
}
}
private async Task MapE2BInstanceForReportInstanceAsync(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto dto)
{
var latestExecutionEvent = reportInstanceFromRepo.CurrentActivity.GetLatestEvent();
if (latestExecutionEvent != null)
{
var tag = reportInstanceFromRepo.WorkFlow.Description == "New Active Surveilliance Report" ? "Active" : "Spontaneous";
var datasetInstance = await _datasetInstanceRepository.GetAsync(di => di.Tag == tag && di.ContextId == latestExecutionEvent.Id, new string[] { "Dataset" });
if (datasetInstance != null)
{
dto.E2BInstance = new DatasetInstanceDto()
{
DatasetId = datasetInstance.Dataset.Id,
DatasetInstanceId = datasetInstance.Id
};
}
}
}
private async Task MapE2BActivitiesForReportInstanceAsync(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto dto)
{
switch (reportInstanceFromRepo.CurrentActivity.QualifiedName)
{
case "Extract E2B":
if (reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description == "E2BINITIATED")
{
await MapE2BInstanceForReportInstanceAsync(reportInstanceFromRepo, dto);
}
if (reportInstanceFromRepo.CurrentActivity.CurrentStatus.Description == "E2BGENERATED")
{
MapE2BAttachmentForReportInstance(reportInstanceFromRepo, dto);
}
break;
default:
break;
}
}
private async Task MapIdsForReportInstanceAsync(ReportInstance reportInstanceFromRepo, ReportInstanceDetailDto dto)
{
var patientClinicalEvent = await _patientClinicalEventRepository.GetAsync(p => p.PatientClinicalEventGuid == reportInstanceFromRepo.ContextGuid, new string[] { "Patient" });
dto.PatientId = patientClinicalEvent != null ? patientClinicalEvent.Patient.Id : 0;
dto.PatientClinicalEventId = patientClinicalEvent != null ? patientClinicalEvent.Id : 0;
}