public static string GetTab(RegionState state)
{
switch (state)
{
case RegionState.LevelHeader:
case RegionState.LevelFooter:
case RegionState.ModelsLoader:
return("");
case RegionState.AreaHeader:
case RegionState.AreaData:
case RegionState.AreaFooter:
return("\t");
case RegionState.GeoLayout:
return("\t\t");
case RegionState.Collision:
case RegionState.DisplayList:
return("\t\t\t");
case RegionState.TextureInfo:
case RegionState.VertexInfo:
case RegionState.LightData:
case RegionState.GraphicsData:
return("\t\t\t\t");
}
return("");
}
public void AddAndGetAlleleCounts()
{
var testRegion = new RegionState(1000, 2000);
for (var i = 0; i < 5; i++)
{
testRegion.AddAlleleCount(1001, AlleleType.A, DirectionType.Forward);
}
for (var i = 0; i < 2; i++)
{
testRegion.AddAlleleCount(1001, AlleleType.C, DirectionType.Forward);
}
for (var i = 0; i < 12; i++)
{
testRegion.AddAlleleCount(1001, AlleleType.C, DirectionType.Reverse);
}
for (var i = 0; i < 15; i++)
{
testRegion.AddAlleleCount(2000, AlleleType.A, DirectionType.Stitched);
}
Assert.Equal(testRegion.GetAlleleCount(1001, AlleleType.A, DirectionType.Forward), 5);
Assert.Equal(testRegion.GetAlleleCount(1001, AlleleType.C, DirectionType.Forward), 2);
Assert.Equal(testRegion.GetAlleleCount(1001, AlleleType.C, DirectionType.Reverse), 12);
Assert.Equal(testRegion.GetAlleleCount(2000, AlleleType.A, DirectionType.Stitched), 15);
Assert.Equal(testRegion.GetAlleleCount(1000, AlleleType.A, DirectionType.Stitched), 0);
Assert.Equal(testRegion.GetAlleleCount(1500, AlleleType.A, DirectionType.Forward), 0);
}
public async Task <TypedResult <StateDTO> > Update(UpdateRegionState regionState)
{
try
{
if (regionState.Id.Equals(Guid.Empty))
{
throw new InvalidOperationException(ErrorMessages.ID_IS_REQUIRED);
}
RegionState existsRecord = await regionStateRepo.FindById(regionState.Id);
if (existsRecord == null)
{
throw new InvalidOperationException(ErrorMessages.THIS_RECORD_DOES_NOT_EXISTS);
}
existsRecord.RegionCountryId = regionState.CountryId;
existsRecord.Title = regionState.Title;
RegionState result = await regionStateRepo.Update(existsRecord);
return(new TypedResult <StateDTO>(_mapper.Map <StateDTO>(result)));
}
catch (Exception ex)
{
return(new TypedResult <StateDTO>(ex));
}
}
private IAlleleSource CreateMockStateManager(List <AlleleCount> states, int refCounts = 0)
{
var mockAlleleCountSource = new Mock <IAlleleSource>();
var numAnchorTypes = 5;
var regionState = new RegionState(1, 1000, numAnchorTypes);
foreach (var state in states)
{
for (var directionIndex = 0; directionIndex < Constants.NumDirectionTypes; directionIndex++)
{
for (var anchorIndex = 0; anchorIndex < numAnchorTypes * 2 + 1; anchorIndex++)
{
for (var i = 0; i < state.DirectionCoverage[directionIndex, anchorIndex]; i++)
{
regionState.AddAlleleCount(state.Coordinate, state.AlleleType, (DirectionType)directionIndex, anchorIndex);
}
}
}
mockAlleleCountSource.Setup(
s => s.GetAlleleCount(state.Coordinate,
state.AlleleType,
It.IsAny <DirectionType>(), It.IsAny <int>(), It.IsAny <int?>(), It.IsAny <bool>(), It.IsAny <bool>()))
.Returns((int c, AlleleType a, DirectionType d, int minAnchor, int?maxAnchor, bool fromEnd, bool symm) =>
{
return(regionState.GetAlleleCount(c, a, d, minAnchor, maxAnchor, fromEnd, symm));
}
);
}
mockAlleleCountSource.Setup(c => c.GetGappedMnvRefCount(It.IsAny <int>())).Returns(refCounts);
return(mockAlleleCountSource.Object);
}
public void SetRegionState(int id, RegionState value)
{
SubVirtualRegion region;
if (subRegions.TryGetValue(id, out region))
{
region.SetState(value);
}
}
public LevelScriptRegion(string dirname, RegionState state, int area = -1, int model = -1) : base(dirname, state, area, model)
{
if (state != RegionState.LevelFooter && state != RegionState.LevelHeader && state != RegionState.ModelsLoader &&
state != RegionState.AreaFooter && state != RegionState.AreaHeader && state != RegionState.AreaData &&
state != RegionState.AreaScrolls)
{
throw new Exception("Level Script Region was used with bad state");
}
}
public LevelScriptRegion(int start, int length, RegionState state) : base(start, length, state)
{
if (state != RegionState.LevelFooter && state != RegionState.LevelHeader && state != RegionState.ModelsLoader &&
state != RegionState.AreaFooter && state != RegionState.AreaHeader && state != RegionState.AreaData &&
state != RegionState.AreaScrolls)
{
throw new Exception("Level Script Region was used with bad state");
}
}
public DynamicRegion(string dirname, RegionState state, int area = -1, int model = -1) : base(dirname, state, area, model)
{
if (state == RegionState.LevelFooter || state == RegionState.LevelHeader || state == RegionState.ModelsLoader ||
state == RegionState.AreaFooter || state == RegionState.AreaHeader || state == RegionState.AreaData ||
state == RegionState.GeoLayout || state == RegionState.DisplayList)
{
throw new ArgumentException("Using DynamicRegion with given state is not allowed");
}
}
// TODO: Bullshit, make like bunch of classes or something
public DynamicRegion(int start, int length, RegionState state) : base(start, length, state)
{
if (state == RegionState.LevelFooter || state == RegionState.LevelHeader || state == RegionState.ModelsLoader ||
state == RegionState.AreaFooter || state == RegionState.AreaHeader || state == RegionState.AreaData ||
state == RegionState.GeoLayout || state == RegionState.DisplayList)
{
throw new ArgumentException("Using DynamicRegion with given state is not allowed");
}
}
public void SetRegionState(int id, RegionState value)
{
SubVirtualRegion region;
if (subRegions.TryGetValue(id, out region))
{
region.SetState(value);
}
}
public void AddAndGetCandidates_Errors()
{
var testRegion = new RegionState(1000, 2000);
Assert.Throws <ArgumentException>(
() => testRegion.AddCandidate(new CandidateAllele("chr1", 999, "A", "T", AlleleCategory.Snv)));
Assert.Throws <ArgumentException>(
() => testRegion.GetAlleleCount(2001, AlleleType.A, DirectionType.Forward));
}
public void Create_P1Armies17_AreEqual()
{
var act = RegionState.Create(17, PlayerType.player1);
var expOwner = PlayerType.player1;
var expArmies = 17;
Assert.AreEqual(expOwner, act.Owner, "Owner");
Assert.AreEqual(expArmies, act.Armies, "Armies");
}
// Read from dirname init
public Region(string dirname, RegionState state, int area = -1, int model = -1, int number = -1)
{
string levelHeaderPath = PathComposer.ComposeName(dirname, state, area, model, number);
this.data = File.ReadAllBytes(levelHeaderPath);
this.length = data.Length;
this.area = area;
this.model = model;
this.number = number;
}
private List <int> GetAllRefCounts(RegionState testRegion)
{
var refCounts = new List <int>();
for (int position = testRegion.StartPosition; position <= testRegion.EndPosition; position++)
{
refCounts.Add(testRegion.GetGappedMnvRefCount(position));
}
return(refCounts);
}
// Empty region init
public Region(int start, int length, RegionState state)
{
this.romStart = start;
this.length = length;
this.state = state;
if (start == 0)
{
throw new ArgumentNullException("ROM Region Start is 0, bug?");
}
}
public void Contains()
{
var region = new RegionState(1, 5);
for (var i = 1; i <= 5; i++)
{
Assert.True(region.ContainsPosition(i));
}
Assert.False(region.ContainsPosition(0));
Assert.False(region.ContainsPosition(6));
}
public void BeginRegion()
{
if (!_atLineStart)
{
Line();
}
_regionStateStack.Push(_regionState);
_regionState = new RegionState()
{
AtStart = true
};
}
//see wiki.warlight.net/index.php/Combat_Basics
private SimulationOutcome SimulateAttack(RegionState source, RegionState target, int armies)
{
//int attackers, int defenders, out int attackersDestroyed, out int defendersDestroyed
int attackingArmies = armies;
int defendingArmies = target.Armies;
var attackersDestroyed = 0;
var defendersDestroyed = 0;
for (int t = 1; t <= attackingArmies; t++) //calculate how much defending armies are destroyed
{
double rand = Rnd.NextDouble();
//60% chance to destroy one defending army
if (rand < AttackFactor)
{
defendersDestroyed++;
}
}
for (int t = 1; t <= defendingArmies; t++) //calculate how much attacking armies are destroyed
{
double rand = Rnd.NextDouble();
//70% chance to destroy one attacking army
if (rand < DefendFactor)
{
attackersDestroyed++;
}
}
if (attackersDestroyed >= attackingArmies)
{
if (defendersDestroyed >= defendingArmies)
{
defendersDestroyed = defendingArmies - 1;
}
attackersDestroyed = attackingArmies;
}
//process result of attack
if (defendersDestroyed >= defendingArmies) //attack success
{
var survivors = attackingArmies - attackersDestroyed;
return(new SimulationOutcome(source.Leave(armies), RegionState.Create(survivors, source.Owner)));
}
else //attack fail
{
return(new SimulationOutcome(source.Leave(attackersDestroyed), target.Leave(defendersDestroyed)));
}
}
private void ToggleRegion(RegionState state)
{
if (state == RegionState.DropDownList)
{
lblRegion.CssClass = "dnnFormRequired";
txtRegion.Visible = false;
cboRegion.Visible = true;
rfvRegion.Enabled = true;
}
else
{
lblRegion.CssClass = string.Empty;
txtRegion.Visible = true;
cboRegion.Visible = false;
rfvRegion.Enabled = false;
}
}
public void Equality()
{
// happy path
var testRegion = new RegionState(1500, 7002);
var otherRegion = new RegionState(1500, 7002);
Assert.True(testRegion.Equals(otherRegion));
Assert.True(otherRegion.Equals(testRegion));
// error conditions
otherRegion = new RegionState(1501, 7002); // diff start
Assert.False(testRegion.Equals(otherRegion));
otherRegion = new RegionState(1500, 7001); // diff end
Assert.False(testRegion.Equals(otherRegion));
Assert.False(testRegion.Equals("otherobject"));
}
public SimulationDistribution Simulate(RegionState source, RegionState target, int armies, int simulations = 1000)
{
if (source.Owner == target.Owner)
{
var outcome = new SimulationOutcome(source.Leave(armies), target.Arive(armies));
return(null);
}
var success = new Dictionary <RegionState, int>();
var failure = new Dictionary <SimulationOutcome, int>();
for (var simulation = 0; simulation < simulations; simulation++)
{
var outcome = SimulateAttack(source, target, armies);
if (outcome.HaveSameOwner)
{
if (!success.ContainsKey(outcome.Target))
{
success[outcome.Target] = 1;
}
else
{
success[outcome.Target]++;
}
}
else
{
if (!failure.ContainsKey(outcome))
{
failure[outcome] = 1;
}
else
{
failure[outcome]++;
}
}
}
return(new SimulationDistribution()
{
Source = source.Leave(armies),
Success = success,
Failure = failure,
});
}
public void Constructor()
{
// happy path
var testRegion = new RegionState(1, 6000);
Assert.Equal(testRegion.StartPosition, 1);
Assert.Equal(testRegion.EndPosition, 6000);
Assert.Equal(6000, testRegion.Size);
// error conditions
// start position
Assert.Throws <ArgumentException>(() => new RegionState(0, 6000)); // zero
Assert.Throws <ArgumentException>(() => new RegionState(-100, 6000)); // negative
// end position
Assert.Throws <ArgumentException>(() => new RegionState(1, 0)); // zero
Assert.Throws <ArgumentException>(() => new RegionState(1, -100)); // negative
Assert.Throws <ArgumentException>(() => new RegionState(1, 1)); // equal start
Assert.Throws <ArgumentException>(() => new RegionState(6, 1)); // less than start
}
public async Task <TypedResult <bool> > Remove(Guid Id)
{
try
{
RegionState existsRecord = await regionStateRepo.FindById(Id);
if (existsRecord == null)
{
throw new InvalidOperationException(ErrorMessages.THIS_RECORD_DOES_NOT_EXISTS);
}
Boolean result = await regionStateRepo.Delete(Id);
return(new TypedResult <Boolean>(result));
}
catch (Exception ex)
{
return(new TypedResult <Boolean>(ex));
}
}
public void Simulate_20Vs11_10000Runs()
{
var source = RegionState.Create(20, PlayerType.player1);
var target = RegionState.Create(11, PlayerType.player2);
var rnd = new MT19937Generator(17);
var simulator = new Simulator(rnd);
var sw = new Stopwatch();
sw.Start();
var act = simulator.Simulate(source, target, 19, 10000);
sw.Stop();
Console.WriteLine(sw.Elapsed.TotalMilliseconds);
Console.WriteLine("success: {0}, failure: {1}", act.SuccessCount, act.FailureCount);
}
public void AddAndGetGappedMnvReferenceCounts_Errors()
{
var testRegion = new RegionState(50, 150);
testRegion.AddGappedMnvRefCount(150, 10);
var refCountsBefore = GetAllRefCounts(testRegion);
// -----------------------------------------------
// adding at an invalid position should do nothing
// -----------------------------------------------
testRegion.AddGappedMnvRefCount(151, 1);
var refCountsAfter = GetAllRefCounts(testRegion);
Assert.True(refCountsAfter.SequenceEqual(refCountsBefore));
// -----------------------------------------------
// getting at an invalid position should throw exception
// -----------------------------------------------
Assert.Throws <ArgumentException>(() => testRegion.GetGappedMnvRefCount(151));
}
public void AddAndGetGappedMnvReferenceCounts()
{
var testRegion = new RegionState(50, 150);
// -----------------------------------------------
// happy path - add a couple of counts,
// getting them should return the same
// -----------------------------------------------
testRegion.AddGappedMnvRefCount(75, 1);
testRegion.AddGappedMnvRefCount(76, 10);
Assert.Equal(1, testRegion.GetGappedMnvRefCount(75));
Assert.Equal(10, testRegion.GetGappedMnvRefCount(76));
// -----------------------------------------------
// happy path - add a couple of counts to existing ref,
// it should be incremented but others should be unchanged
// -----------------------------------------------
testRegion.AddGappedMnvRefCount(76, 3);
Assert.Equal(1, testRegion.GetGappedMnvRefCount(75));
Assert.Equal(13, testRegion.GetGappedMnvRefCount(76));
}
public async Task <TypedResult <StateDTO> > Add(InsertRegionState regionState)
{
try
{
ICollection <RegionState> existsRecords = await regionStateRepo
.GetList(condition : x => x.RegionCountryId == regionState.CountryId && x.Title.Equals(regionState.Title));
if (existsRecords.Any())
{
throw new InvalidOperationException(ErrorMessages.THIS_RECORD_ALREADY_EXISTS);
}
RegionState entity = _mapper.Map <RegionState>(regionState);
RegionState result = await regionStateRepo.Add(entity);
return(new TypedResult <StateDTO>(_mapper.Map <StateDTO>(result)));
}
catch (Exception ex)
{
return(new TypedResult <StateDTO>(ex));
}
}
public void ExecuteTest_GetCandidates(bool withReference, bool withIntervals)
{
var testRegion = new RegionState(1, 50);
var chrReference = new ChrReference()
{
Name = "chr1",
Sequence = string.Concat(Enumerable.Repeat("A", 50))
};
var snv1 = new CandidateAllele("chr1", 5, "A", "T", AlleleCategory.Snv)
{
SupportByDirection = new [] { 10, 5, 0 }
};
var snv2 = new CandidateAllele("chr1", 15, "A", "T", AlleleCategory.Snv)
{
SupportByDirection = new[] { 10, 5, 0 }
};
testRegion.AddCandidate(snv1);
testRegion.AddCandidate(snv2);
for (var i = 0; i < 5; i++)
{
testRegion.AddAlleleCount(5, AlleleType.A, DirectionType.Stitched); // ref @ variant position
testRegion.AddAlleleCount(6, AlleleType.A, DirectionType.Stitched); // ref by itself
testRegion.AddAlleleCount(10, AlleleType.C, DirectionType.Stitched); // nonref by itself (no ref)
testRegion.AddAlleleCount(15, AlleleType.A, DirectionType.Reverse); // ref (multiple directions) + nonref
testRegion.AddAlleleCount(15, AlleleType.A, DirectionType.Forward);
testRegion.AddAlleleCount(15, AlleleType.T, DirectionType.Reverse);
}
ChrIntervalSet intervals = null;
if (withIntervals)
{
intervals = new ChrIntervalSet(new List <CallSomaticVariants.Logic.RegionState.Region>()
{
new CallSomaticVariants.Logic.RegionState.Region(3, 6),
new CallSomaticVariants.Logic.RegionState.Region(16, 16)
}, "chr1");
}
var expectedList = new List <CandidateAllele>();
expectedList.Add(snv1);
expectedList.Add(snv2);
if (withReference)
{
expectedList.Add(new CandidateAllele("chr1", 5, "A", "A", AlleleCategory.Reference)
{
SupportByDirection = new[] { 0, 0, 5 }
});
expectedList.Add(new CandidateAllele("chr1", 6, "A", "A", AlleleCategory.Reference)
{
SupportByDirection = new[] { 0, 0, 5 }
});
expectedList.Add(new CandidateAllele("chr1", 10, "A", "A", AlleleCategory.Reference)
{
SupportByDirection = new[] { 0, 0, 0 }
});
expectedList.Add(new CandidateAllele("chr1", 15, "A", "A", AlleleCategory.Reference)
{
SupportByDirection = new[] { 5, 5, 0 }
});
}
if (withIntervals)
{
expectedList = expectedList.Where(c => c.Coordinate == 5 || c.Coordinate == 6 || c.Type != AlleleCategory.Reference).ToList();
if (withReference)
{
expectedList.Add(new CandidateAllele("chr1", 3, "A", "A", AlleleCategory.Reference)
{
SupportByDirection = new[] { 0, 0, 0 }
});
expectedList.Add(new CandidateAllele("chr1", 4, "A", "A", AlleleCategory.Reference)
{
SupportByDirection = new[] { 0, 0, 0 }
});
expectedList.Add(new CandidateAllele("chr1", 16, "A", "A", AlleleCategory.Reference)
{
SupportByDirection = new[] { 0, 0, 0 }
});
}
}
var allCandidates = testRegion.GetAllCandidates(withReference, chrReference, intervals);
VerifyCandidates(expectedList, allCandidates);
}
public void AddAndGetCandidates()
{
// -----------------------------------------------
// simple test case adding candidate to empty region
// -----------------------------------------------
var testRegion = new RegionState(1000, 2000);
var snv1 = new CandidateAllele("chr1", 1500, "A", "T", AlleleCategory.Snv)
{
SupportByDirection = new[] { 10, 0, 0 }
};
testRegion.AddCandidate(snv1);
var allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 1);
var fetchedCandidate = allCandidates[0];
Assert.True(fetchedCandidate.Equals(snv1));
// -----------------------------------------------
// add same type of candidate but at different position
// -----------------------------------------------
var snv2 = new CandidateAllele("chr1", 1501, "A", "T", AlleleCategory.Snv)
{
SupportByDirection = new[] { 5, 0, 0 }
};
testRegion.AddCandidate(snv2);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 2);
// make sure coverage is preserved
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv1));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 10);
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv2));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 5);
// -----------------------------------------------
// add a different type of candidate at same position
// -----------------------------------------------
var deletion1 = new CandidateAllele("chr1", 1500, "AT", "A", AlleleCategory.Deletion)
{
SupportByDirection = new[] { 15, 0, 0 }
};
testRegion.AddCandidate(deletion1);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 3);
// make sure coverage is preserved
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv1));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 10);
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv2));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 5);
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(deletion1));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 15);
// -----------------------------------------------
// add same variant, but more coverage
// -----------------------------------------------
var moreSnv1 = new CandidateAllele("chr1", 1500, "A", "T", AlleleCategory.Snv)
{
SupportByDirection = new[] { 2, 0, 0 }
};
testRegion.AddCandidate(moreSnv1);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 3);
// make sure coverage is incremented
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv1));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 12);
// make sure coverage is preserved
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv2));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 5);
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(deletion1));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 15);
var moreDeletion1 = new CandidateAllele("chr1", 1500, "AT", "A", AlleleCategory.Deletion)
{
SupportByDirection = new[] { 0, 18, 0 }
};
testRegion.AddCandidate(moreDeletion1);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 3);
// make sure coverage is incremented
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(deletion1));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 33);
// make sure coverage is preserved
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv1));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 12);
fetchedCandidate = allCandidates.FirstOrDefault(c => c.Equals(snv2));
Assert.True(fetchedCandidate != null && fetchedCandidate.Support == 5);
// -----------------------------------------------
// add insertion that goes off block
// -----------------------------------------------
var edgeInsertion = new CandidateAllele("chr1", 2000, "A", "TCG", AlleleCategory.Insertion)
{
SupportByDirection = new[] { 5, 0, 0 }
};
testRegion.AddCandidate(edgeInsertion);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 4);
Assert.Equal(2001, testRegion.MaxAlleleEndpoint);
// -----------------------------------------------
// add mnv that goes off block
// -----------------------------------------------
var edgeMnv = new CandidateAllele("chr1", 1999, "ATCC", "TCGG", AlleleCategory.Mnv)
{
SupportByDirection = new[] { 5, 0, 0 }
};
testRegion.AddCandidate(edgeMnv);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 5);
Assert.Equal(2002, testRegion.MaxAlleleEndpoint);
// -----------------------------------------------
// add deletion that goes off block
// -----------------------------------------------
var edgeDeletion = new CandidateAllele("chr1", 1999, "A" + new string('T', 25), "A", AlleleCategory.Deletion)
{
SupportByDirection = new[] { 5, 0, 0 }
};
testRegion.AddCandidate(edgeDeletion);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 6);
Assert.Equal(2025, testRegion.MaxAlleleEndpoint);
// -----------------------------------------------
// add variant that goes off block but not as far as the deletion did - max endpoint should stay the same
// -----------------------------------------------
var edgeMnv2 = new CandidateAllele("chr1", 1999, "ATCGA", "TCGCT", AlleleCategory.Mnv)
{
SupportByDirection = new[] { 5, 0, 0 }
};
testRegion.AddCandidate(edgeMnv2);
allCandidates = testRegion.GetAllCandidates(false, null);
Assert.Equal(allCandidates.Count, 7);
Assert.Equal(2025, testRegion.MaxAlleleEndpoint);
}
public static bool IsRegionFileExists(string dirname, RegionState state, int area = -1, int model = -1, int number = -1)
{
string path = ComposeName(dirname, state, area, model, number);
return(File.Exists(path));
}
public static string ComposeName(string dirname, RegionState state, int area = -1, int model = -1, int number = -1)
{
string regionPath = null;
switch (state)
{
case RegionState.LevelHeader:
regionPath = Path.Combine(dirname, "header");
break;
case RegionState.LevelFooter:
regionPath = Path.Combine(dirname, "footer");
break;
case RegionState.ModelsLoader:
regionPath = Path.Combine(dirname, "models", "loader");
break;
case RegionState.AreaHeader:
if (area == -1)
{
throw new ArgumentException("Orphan AreaHeader!");
}
regionPath = Path.Combine(dirname, "area" + area, "header");
break;
case RegionState.AreaData:
if (area == -1)
{
throw new ArgumentException("Orphan AreaData!");
}
regionPath = Path.Combine(dirname, "area" + area, "objects");
break;
case RegionState.AreaScrolls:
if (area == -1)
{
throw new ArgumentException("Orphan AreaScrolls!");
}
regionPath = Path.Combine(dirname, "area" + area, "scrolls");
break;
case RegionState.AreaFooter:
if (area == -1)
{
throw new ArgumentException("Orphan AreaFooter!");
}
regionPath = Path.Combine(dirname, "area" + area, "footer");
break;
case RegionState.GeoLayout:
if (area != -1)
{
regionPath = Path.Combine(dirname, "area" + area, "geolayout");
}
else if (model != -1)
{
regionPath = Path.Combine(dirname, "models", "geolayout" + model);
}
else
{
throw new ArgumentException("Orphan Geolayout!");
}
break;
case RegionState.Collision:
if (area == -1)
{
throw new ArgumentException("Orphan Collision!");
}
regionPath = Path.Combine(dirname, "area" + area, "collision");
break;
case RegionState.DisplayList:
if (area != -1)
{
regionPath = Path.Combine(dirname, "area" + area, "graphics", "disp" + number);
}
else if (model != -1)
{
regionPath = Path.Combine(dirname, "models", "graphics" + model, "disp" + number);
}
else
{
throw new ArgumentException("Orphan DisplayList!");
}
break;
case RegionState.GraphicsData:
if (area != -1)
{
regionPath = Path.Combine(dirname, "area" + area, "graphics", "data");
}
else if (model != -1)
{
regionPath = Path.Combine(dirname, "models", "graphics" + model, "data");
}
else
{
throw new ArgumentException("Orphan GraphicsData!");
}
break;
}
return(regionPath);
}
private void ToggleRegion(RegionState state)
{
if (state == RegionState.DropDownList)
{
lblRegion.CssClass = "dnnFormRequired";
txtRegion.Visible = false;
cboRegion.Visible = true;
rfvRegion.Enabled = true;
}
else
{
lblRegion.CssClass = string.Empty;
txtRegion.Visible = true;
cboRegion.Visible = false;
rfvRegion.Enabled = false;
}
}