public HttpResponseMessage Get(string reaction)
{
try
{
if (!supportedReactions.Contains(reaction.ToUpper()))
{
StringBuilder message = new StringBuilder();
message.Append("Supported reactions: ");
foreach (var str in supportedReactions)
{
message.Append(str.ToLower() + " , ");
}
return(Request.CreateResponse(HttpStatusCode.BadRequest, message.ToString().Substring(0, message.Length - 2)));
}
ReactionCount reactionResult = FDAConnector.GetReactionCount(reaction);
reactionResult.results.Sort();
reactionResult.results = reactionResult.results.Take(10).ToList();
return(Request.CreateResponse(HttpStatusCode.OK, reactionResult));
}
catch (Exception e)
{
Debug.WriteLine("\nException Caught!");
Debug.WriteLine("Message :{0} ", e.Message);
return(Request.CreateResponse(HttpStatusCode.InternalServerError, String.Format("Server Error {0}", e.Message)));
}
}
// GET api/values
public ReactionCount Get()
{
ReactionCount r = new ReactionCount {
results = new List <Result>()
{
new Result {
Term = "a", Count = 5
}
}
};
return(r);
}
/// <summary>
/// Simulate a Step and return data
/// </summary>
/// <param name="stepDuration">Step duration in seconds.</param>
public SimulationStep Step(double stepDuration)
{
CTrajectoryTask trajectoryTask = copasi.TrajectoryTask;
CTrajectoryProblem problem = (CTrajectoryProblem)trajectoryTask.getProblem();
problem.setDuration(stepDuration);
currentTime += stepDuration;
try
{
// now we run the actual trajectory
trajectoryTask.processWithOutputFlags(true, (int)CCopasiTask.NO_OUTPUT);
}
catch
{
if (CCopasiMessage.size() > 0)
{
throw new System.Exception("Running the time course simulation failed: " + CCopasiMessage.getAllMessageText(true));
}
throw new System.Exception("Running the time course simulation failed");
}
// Update the species properties that have changed
ReactionCount[] reactionCount = new ReactionCount[reactionList.Count];
for (int i = 0; i < reactionList.Count; i++)
{
CopasiReactionGroup r = reactionList[i];
reactionCount[i] = r.CalcParticleFlux();
}
// clean up
trajectoryTask.restore();
return(new SimulationStep(reactionCount));
}
public override string ToString()
{
StringBuilder __sb = new StringBuilder("AFUserReactions(");
bool __first = true;
if (__isset.commentCount)
{
if (!__first)
{
__sb.Append(", ");
}
__first = false;
__sb.Append("CommentCount: ");
__sb.Append(CommentCount);
}
if (KnownCommenters != null && __isset.knownCommenters)
{
if (!__first)
{
__sb.Append(", ");
}
__first = false;
__sb.Append("KnownCommenters: ");
__sb.Append(KnownCommenters.ToDebugString());
}
if (ReactionCount != null && __isset.reactionCount)
{
if (!__first)
{
__sb.Append(", ");
}
__first = false;
__sb.Append("ReactionCount: ");
__sb.Append(ReactionCount.ToDebugString());
}
if (KnownReactors != null && __isset.knownReactors)
{
if (!__first)
{
__sb.Append(", ");
}
__first = false;
__sb.Append("KnownReactors: ");
__sb.Append(KnownReactors.ToDebugString());
}
if (MyReactions != null && __isset.myReactions)
{
if (!__first)
{
__sb.Append(", ");
}
__first = false;
__sb.Append("MyReactions: ");
__sb.Append(MyReactions.ToDebugString());
}
if (__isset.viewCount)
{
if (!__first)
{
__sb.Append(", ");
}
__first = false;
__sb.Append("ViewCount: ");
__sb.Append(ViewCount);
}
__sb.Append(")");
return(__sb.ToString());
}
