protected override void Context()
{
_simulation = new ModelCoreSimulation();
var root = new Container();
root.Add(new EventGroup());
_simulation.Model = new Model();
_simulation.Model.Root = root;
_simulation.BuildConfiguration = new BuildConfiguration();
var reactionBuildingBlock = new ReactionBuildingBlock();
var reactionAtoB = new ReactionBuilder();
var reactionBtoA = new ReactionBuilder();
var partnerA = new ReactionPartnerBuilder("A", 0);
var partnerB = new ReactionPartnerBuilder("B", 0);
//Making both reactions dependent on each other
reactionAtoB.AddProduct(partnerA);
reactionBtoA.AddProduct(partnerB);
reactionAtoB.AddEduct(partnerB);
reactionBtoA.AddEduct(partnerA);
reactionBuildingBlock.Add(reactionAtoB);
reactionBuildingBlock.Add(reactionBtoA);
_simulation.BuildConfiguration.Reactions = reactionBuildingBlock;
}
public void TestComplexReactionBB()
{
ReactionBuildingBlock x1 = _buildConfiguration.Reactions as ReactionBuildingBlock;
Assert.IsNotNull(x1);
IReactionBuildingBlock x2 = SerializeAndDeserialize(x1);
AssertForSpecs.AreEqualBuildingBlock(x2, x1);
}
protected override void Context()
{
base.Context();
_parameter = new Parameter {
IsDefault = false
};
_reaction = new ReactionBuilder();
_reaction.AddParameter(_parameter);
_reactionBuildingBlock = new ReactionBuildingBlock {
_reaction
};
}
protected override void Context()
{
_quantity = _parameter;
base.Context();
var reaction = new ReactionBuilder();
reaction.AddParameter(_parameter);
var reactionBuildingBlock = new ReactionBuildingBlock {
reaction
};
_buildingBlockInfo.UntypedBuildingBlock = reactionBuildingBlock;
}
protected override void Context()
{
base.Context();
var reactions = new ReactionBuildingBlock {
new ReactionBuilder().WithName("REACTION")
};
_buildConfiguration.Reactions = reactions;
var passiveTransports = new PassiveTransportBuildingBlock {
new TransportBuilder().WithName("TRANSPORT")
};
_buildConfiguration.PassiveTransports = passiveTransports;
sut = new ValidatorForReactionsAndTransports(_objectTypeResolver, _objectPathFactory);;
}
protected override void Context()
{
base.Context();
_metabolite1 = "metabolite1";
_secondMetabolite = "secondMetabolite";
_secondMetabolite2 = "secondMetabolite2";
_appliedCompound = "compound";
_reactionBuildingBlock = new ReactionBuildingBlock();
A.CallTo(() => _simulation1.Reactions).Returns(_reactionBuildingBlock);
_reactionBuildingBlock.Add(CreateReactionForCompoundAndMetabolite(new[] { _metabolite1 }, _appliedCompound));
_reactionBuildingBlock.Add(CreateReactionForCompoundAndMetabolite(new[] { _secondMetabolite, _secondMetabolite2 }, _metabolite1));
CreateMultipleAdministrationForMolecule(_appliedCompound);
A.CallTo(() => _simulation1.EndTime).Returns(1000);
}
protected override void Context()
{
base.Context();
_educt1 = "educt1";
_educt2 = "educt2";
_product = "product";
_reactionBuildingBlock = new ReactionBuildingBlock
{
CreateReactionForCompoundAndMetabolite(new[] { _product }, _educt1),
CreateReactionForCompoundAndMetabolite(new[] { _product }, _educt2)
};
A.CallTo(() => _simulation1.Reactions).Returns(_reactionBuildingBlock);
CreateMultipleAdministrationForMolecule(_educt1);
CreateMultipleAdministrationForMolecule(_educt2);
A.CallTo(() => _simulation1.EndTime).Returns(1000);
}
