public override T Read <T>(T obj)
{
if (obj is IAtomContainer)
{
try
{
parserHelper = new PubChemXMLHelper(obj.Builder);
builder = obj.Builder;
return((T)ReadMolecule());
}
catch (IOException e)
{
throw new CDKException("An IO Exception occurred while reading the file.", e);
}
catch (CDKException)
{
throw;
}
catch (Exception e)
{
throw new CDKException("An error occurred: " + e.Message, e);
}
}
else
{
throw new CDKException("Only supported is reading of IAtomContainer objects.");
}
}
/// <summary>
/// Constructs a new EnumerablePCSubstancesXMLReader that can read
/// </summary>
/// <param name="input">The input stream</param>
/// <param name="builder">The builder</param>
/// <exception cref="IOException">if there is error in getting the <see cref="NCDK.Config.IsotopeFactory"/></exception>
/// <event cref="Exception">if there is an error in setting up the XML parser</event>
public EnumerablePCSubstancesXMLReader(TextReader input, IChemObjectBuilder builder)
{
parserHelper = new PubChemXMLHelper(builder);
primarySource = input;
try
{
parser = XDocument.Load(primarySource).Root;
}
catch (Exception e)
{
throw new CDKException("Error while opening the input:" + e.Message, e);
}
}