public string GetString(int MatchNumber,int RefMatchNumber /* if no refs =-1 */)
{
ProteinPair Pair;
if (Aligner != null) {
Pair = Aligner.GetProtPair(this, MatchNumber, RefMatchNumber);
}else{
Pair = new ProteinPair();
//чего можем то заполним
for (int i = 0 ; i < Peptides.Count ; i++){
if (Peptides[i].Matches[MatchNumber] != null){
Pair.LeftScore += Peptides[i].Matches[MatchNumber].Score;
Pair.NCount++;
}
}
Pair.RightScore = Pair.LeftScore;
}
string Res =
((ReportString[0]!='1')?"":String.Format("\"{0}\"\t",ipi))+
((ReportString[1]!='1')?"":String.Format("{0:f4}\t",Pair.LeftScore))+
((ReportString[2]!='1')?"":String.Format("{0:f4}\t",Pair.RightScore))+
((ReportString[3]!='1')?"":String.Format("\"{0}\"\t",Desc))+
((ReportString[4]!='1')?"":(Utils.IPIListtoString(ipis))+"\t")+
((ReportString[5]!='1')?"":String.Format("{0}\t",Peptides.Count))+
((ReportString[6]!='1')?"":String.Format("{0}\t",Pair.NCount))+
((ReportString[7]!='1')?"":String.Format("{0:f4}\t",Pair.RSquare))+
((ReportString[8]!='1')?"":String.Format("{0:f4}\t",Pair.Slope))+
((ReportString[9]!='1')?"":String.Format("{0:f4}\t",Pair.Median))+
((ReportString[10]!='1')?"":String.Format("{0:f4}\t",Pair.PrAverage))+
((ReportString[11]!='1')?"":String.Format("{0:f4}\t",Pair.MinInterval))+
((ReportString[12]!='1')?"":String.Format("{0:f4}\t",Pair.MaxInterval))+
((ReportString[13]!='1')?"":String.Format("{0:e4}",Pair.PValue));
return Res;
}
public string GetSheetString(int RefNumber)
{
ProteinPair Pair;
if (Aligner != null) {
Pair = Aligner.GetProtPair(this, RefNumber, RefNumber);
}else{
Pair = new ProteinPair();
Pair.RightScore = 0.0;
}
string Res =
((SheetReportString[0]!='1')?"":String.Format("{0}\t",ipi))+
((SheetReportString[1]!='1')?"":String.Format("{0:f2}\t",Pair.RightScore))+
((SheetReportString[2]!='1')?"":String.Format("{0}\t",Desc))+
((SheetReportString[3]!='1')?"":(Utils.IPIListtoString(ipis))+"\t")+
((SheetReportString[4]!='1')?"":String.Format("{0}\t",Peptides.Count));
for (int i = 0 ; i < FileList.Count ; i++){
if (Aligner != null){
Pair = Aligner.GetProtPair(this, i, RefNumber);
}else{
break;
}
Res = Res +
((SheetReportString[5]!='1')?"":String.Format("{0:f5}\t",Pair.Median))+
((SheetReportString[6]!='1')?"":String.Format("{0:f5}\t",Pair.Slope))+
((SheetReportString[7]!='1')?"":String.Format("{0:f5}\t",Pair.PrAverage))+
((SheetReportString[8]!='1')?"":String.Format("{0:f5}\t",Pair.MinInterval))+
((SheetReportString[9]!='1')?"":String.Format("{0:f5}\t",Pair.MaxInterval))+
((SheetReportString[10]!='1')?"":String.Format("{0:f5}\t",Pair.RSquare));
}
double[] RawScores = new double[FileList.Count];
if (SheetReportString[12]=='1' || SheetReportString[1]=='1'){
for (int i = 0 ; i < FileList.Count ; i++){
for (int j = 0 ; j<Peptides.Count ; j++){
if (Peptides[j].Matches[i] != null &&
Peptides[j].Matches[i].Score > 0.0){
if (RefNumber <0 || Peptides[j].Matches[RefNumber] != null){
RawScores[i] += Peptides[j].Matches[i].Score;
}
}
}
}
}
//ppm's
if (SheetReportString[12]=='1'){
Res += "\t";
for (int i = 0 ; i < FileList.Count ; i++){
double PPM = (RawScores[i] / FileFactors[i]) * 1000000.0;
Res += String.Format("{0:f5}\t",PPM);
}
}
//Raw values
if (SheetReportString[13]=='1'){
Res += "\t";
for (int i = 0 ; i < FileList.Count ; i++){
Res += String.Format("{0:f5}\t",RawScores[i]);
}
}
return Res;
}
