private void DoWork()
{
try
{
// just do the basic name+description parsing, no regex or web access - we don't use extended metadata here
var fastaImporter = new WebEnabledFastaImporter(new WebEnabledFastaImporter.FakeWebSearchProvider());
var proteins = new Dictionary <string, ProteinData>();
foreach (var path in FastaFilePaths)
{
var statusText = "Reading FASTA file " + Path.GetFileName(path);
var fileInfo = new FileInfo(path);
var reader = File.OpenText(path);
foreach (var protein in fastaImporter.Import(File.OpenText(path)))
{
if (!UpdateProgress(statusText, (int)(reader.BaseStream.Position * 100 / fileInfo.Length)))
{
return;
}
ProteinData proteinData;
if (!proteins.TryGetValue(protein.Sequence, out proteinData))
{
proteinData = new ProteinData(protein.Sequence);
proteins.Add(protein.Sequence, proteinData);
}
foreach (var name in protein.Names)
{
proteinData.AddName(name.Name, name.Description);
}
}
}
UpdatePeptides(proteins);
if (!IsDisposed)
{
BeginInvoke(new Action(Close));
}
}
finally
{
lock (this)
{
_running = false;
Monitor.PulseAll(this);
}
}
}
private void DoWork()
{
try
{
// just do the basic name+description parsing, no regex or web access - we don't use extended metadata here
var fastaImporter = new WebEnabledFastaImporter(new WebEnabledFastaImporter.FakeWebSearchProvider());
var proteins = new Dictionary<string, ProteinData>();
foreach (var path in FastaFilePaths)
{
var statusText = "Reading FASTA file " + Path.GetFileName(path);
var fileInfo = new FileInfo(path);
var reader = File.OpenText(path);
foreach (var protein in fastaImporter.Import(File.OpenText(path)))
{
if (!UpdateProgress(statusText, (int) (reader.BaseStream.Position * 100 / fileInfo.Length)))
{
return;
}
ProteinData proteinData;
if (!proteins.TryGetValue(protein.Sequence, out proteinData))
{
proteinData = new ProteinData(protein.Sequence);
proteins.Add(protein.Sequence, proteinData);
}
foreach (var name in protein.Names)
{
proteinData.AddName(name.Name, name.Description);
}
}
}
UpdatePeptides(proteins);
if (!IsDisposed)
{
BeginInvoke(new Action(Close));
}
}
finally
{
lock(this)
{
_running = false;
Monitor.PulseAll(this);
}
}
}
