/// <summary>
/// Validate Muscle multiple sequence alignment with different profiler and
/// profile score function name.
/// </summary>
/// <param name="nodeName">xml node name.</param>
/// <param name="expectedScoreNode">Expected score node</param>
/// <param name="profileName">SW/NW profiler</param>
/// <param name="profileScoreFunctionName">Profile score function name</param>
/// <param name="isWeightedProduct">True if it of the WeightedProduct type else false.</param>
private void ValidatePamsamAlignWithProfileScoreFunctionName(string nodeName,
string expectedScoreNode,
ProfileAlignerNames profileName,
ProfileScoreFunctionNames profileScoreFunctionName,
bool isWeightedProduct)
{
ValidatePamsamAlign(nodeName, expectedScoreNode,
UpdateDistanceMethodsTypes.Average,
DistanceFunctionTypes.EuclideanDistance, profileName,
profileScoreFunctionName, isWeightedProduct);
ApplicationLog.WriteLine(String.Format(null,
@"PamsamBvtTest:: Pamsam alignment validation completed successfully with different profile score function name {0}",
profileScoreFunctionName.ToString()));
}
/// <summary>
/// Validate Muscle multiple sequence alignment with different
/// profiler and profile score function name.
/// </summary>
/// <param name="nodeName">xml node name.</param>
/// <param name="moleculeType">molecule type of sequences</param>
/// <param name="expectedScoreNode">expected score xml node</param>
/// <param name="profileName">SW/NW profiler</param>
/// <param name="profileScoreFunctionName">Profile score function name</param>
private void ValidatePamsamAlignWithProfileScoreFunctionName(string nodeName,
MoleculeType moleculeType, string expectedScoreNode,
ProfileAlignerNames profileName,
ProfileScoreFunctionNames profileScoreFunctionName)
{
ValidatePamsamAlign(nodeName, moleculeType, expectedScoreNode,
UpdateDistanceMethodsTypes.Average,
DistanceFunctionTypes.EuclideanDistance, profileName,
profileScoreFunctionName, kmerLength,
false, false);
ApplicationLog.WriteLine(String.Format(null,
@"PamsamP1Test:: Pamsam alignment validation completed successfully for {0}
moleculetype with different profile score function name {1}",
moleculeType.ToString(), profileScoreFunctionName.ToString()));
}
