protected override void Context()
{
_renamedField = new PopulationAnalysisParameterField {
Name = _oldName, ParameterPath = "Path"
};
_groupingFieldUsing1 = new PopulationAnalysisGroupingField(new NumberOfBinsGroupingDefinition(_oldName)
{
NumberOfBins = 5
})
{
Name = "Using1"
};
_groupingFieldUsing2 = new PopulationAnalysisGroupingField(new FixedLimitsGroupingDefinition(_oldName))
{
Name = "Using2"
};
_groupingFieldNotUsing = new PopulationAnalysisGroupingField(new FixedLimitsGroupingDefinition("ANOTHER NAME"))
{
Name = "NotUsing"
};
_expressionField = new PopulationAnalysisExpressionField($"[{_oldName}] + [Field2]")
{
Name = "Expression"
};
sut = new PopulationPivotAnalysis();
sut.Add(_renamedField);
sut.Add(_groupingFieldUsing1);
sut.Add(_groupingFieldNotUsing);
sut.Add(_groupingFieldUsing2);
sut.Add(_expressionField);
}
protected override void Context()
{
_pivotAnalysis = new PopulationPivotAnalysis();
_pivotAnalysis.Add(_genderField);
_pivotAnalysis.Add(_raceField);
_pivotAnalysis.Add(_bmiField);
_pivotAnalysis.Add(_cmaxField);
var grouping = new FixedLimitsGroupingDefinition(_bmiField.Name);
grouping.SetLimits(new[] { 25d }.OrderBy(x => x));
grouping.AddItems(PopulationAnalysisHelperForSpecs.BMIGroups);
_bmiClass = new PopulationAnalysisGroupingField(grouping)
{
Name = "BMI class"
};
_pivotAnalysis.Add(_bmiClass);
_dimensionRepository = A.Fake <IDimensionRepository>();
_pivotResultCreator = A.Fake <IPivotResultCreator>();
var userSettings = A.Fake <ICoreUserSettings>();
userSettings.NumberOfIndividualsPerBin = 1;
userSettings.NumberOfBins = 2;
_binIntervalsCreator = new BinIntervalsCreator(userSettings);
sut = new RangeChartDataCreator(_dimensionRepository, _pivotResultCreator, _binIntervalsCreator);
}
protected override void Context()
{
base.Context();
_populationDataCollector = A.Fake <IPopulationDataCollector>();
_templatePopulationAnalysis = new PopulationPivotAnalysis();
_parameterFound = new PopulationAnalysisParameterField {
ParameterPath = "P1"
};
_parameterNotFound = new PopulationAnalysisParameterField {
ParameterPath = "P2"
};
_templatePopulationAnalysis.Add(_parameterFound);
_templatePopulationAnalysis.Add(_parameterNotFound);
_cache = new PathCacheForSpecs <IParameter> {
{ "P1", new PKSimParameter() }
};
A.CallTo(_templateTask).WithReturnType <PopulationAnalysis>().Returns(_templatePopulationAnalysis);
A.CallTo(() => _entitiesInContainerRetriever.ParametersFrom(_populationDataCollector)).Returns(_cache);
A.CallTo(_dialogCreator).WithReturnType <ViewResult>().Returns(ViewResult.Yes);
}
protected override Task Context()
{
_fieldMapper = A.Fake <PopulationAnalysisFieldMapper>();
sut = new PopulationAnalysisMapper(_fieldMapper);
_populationStatisticalAnalysis = new PopulationStatisticalAnalysis();
_selectedStatisticalAnalysis = new PredefinedStatisticalAggregation {
Method = StatisticalAggregationType.Max, Selected = true, LineStyle = LineStyles.Dash
};
_populationStatisticalAnalysis.AddStatistic(_selectedStatisticalAnalysis);
_populationStatisticalAnalysis.AddStatistic(new PredefinedStatisticalAggregation {
Method = StatisticalAggregationType.Min, Selected = false
});
_populationBoxWiskerAnalysis = new PopulationBoxWhiskerAnalysis {
ShowOutliers = true
};
_field1 = A.Fake <IPopulationAnalysisField>().WithName("Field1");
_field2 = A.Fake <IPopulationAnalysisField>().WithName("Field2");
_populationPivotAnalysis = new PopulationPivotAnalysis();
_populationPivotAnalysis.Add(_field1);
_populationPivotAnalysis.Add(_field2);
_populationPivotAnalysis.SetPosition(_field1, PivotArea.FilterArea, 1);
_populationPivotAnalysis.SetPosition(_field2, PivotArea.RowArea, 2);
_snapshotField1 = new PopulationAnalysisField().WithName(_field1.Name);
_snapshotField2 = new PopulationAnalysisField().WithName(_field2.Name);
A.CallTo(() => _fieldMapper.MapToSnapshot(_field1)).Returns(_snapshotField1);
A.CallTo(() => _fieldMapper.MapToSnapshot(_field2)).Returns(_snapshotField2);
return(_completed);
}
protected override void Context()
{
base.Context();
_pivotAnalysis = new PopulationPivotAnalysis();
_parameterField = new PopulationAnalysisCovariateField().WithName("Param");
_dataArea = new PopulationAnalysisParameterField().WithName("OnFilter");
_pivotAnalysis.Add(_parameterField);
_pivotAnalysis.Add(_dataArea);
_pivotAnalysis.SetPosition(_dataArea, PivotArea.DataArea, 0);
}
protected override void Context()
{
base.Context();
_pivotAnalysis = new PopulationPivotAnalysis();
_parameterField = new PopulationAnalysisCovariateField().WithName("Param");
_existingColorField = new PopulationAnalysisCovariateField().WithName("ColorField");
_filterArea = new PopulationAnalysisParameterField().WithName("OnFilter");
_pivotAnalysis.Add(_parameterField);
_pivotAnalysis.Add(_existingColorField);
_pivotAnalysis.Add(_filterArea);
_pivotAnalysis.SetPosition(_filterArea, PivotArea.FilterArea, 0);
_pivotAnalysis.ColorField = _existingColorField;
}
protected override void Context()
{
base.Context();
_sourcePivotAnalysis = new PopulationPivotAnalysis();
_pkParameterField = new PopulationAnalysisPKParameterField().WithName("PKParam");
_pkParameterField.PKParameter = "AUC";
_pkParameterField.QuantityPath = "A|B|C";
_parameterField = new PopulationAnalysisParameterField().WithName("Param");
_parameterField.ParameterPath = "A|B|C|D";
_sourcePivotAnalysis.Add(_pkParameterField);
_sourcePivotAnalysis.Add(_parameterField);
_sourcePivotAnalysis.SetPosition(_parameterField, PivotArea.DataArea, 1);
_sourcePivotAnalysis.SetPosition(_pkParameterField, PivotArea.RowArea, 2);
}
protected override void Context()
{
base.Context();
_pivotAnalysis = new PopulationPivotAnalysis();
_field = new PopulationAnalysisCovariateField().WithName("Param");
_pivotAnalysis.Add(_field);
}
protected override async Task Context()
{
await base.Context();
_populationDataCollector = A.Fake <IPopulationDataCollector>();
_templatePopulationAnalysis = new PopulationPivotAnalysis();
_pkParameterFound = new PopulationAnalysisPKParameterField {
QuantityType = QuantityType.Drug, PKParameter = "AUC", QuantityPath = "P1"
};
_quantityNotFound = new PopulationAnalysisPKParameterField {
QuantityType = QuantityType.Drug, PKParameter = "AUC", QuantityPath = "P2"
};
_pkParameterNotFound = new PopulationAnalysisPKParameterField {
QuantityType = QuantityType.Metabolite, PKParameter = "AUC", QuantityPath = "P3"
};
_templatePopulationAnalysis.Add(_pkParameterFound);
_templatePopulationAnalysis.Add(_quantityNotFound);
_templatePopulationAnalysis.Add(_pkParameterNotFound);
_cache = new PathCacheForSpecs <IQuantity>
{
{ "P1", new MoleculeAmount {
QuantityType = QuantityType.Drug
} },
{ "Q2", new MoleculeAmount {
QuantityType = QuantityType.Drug
} },
{ "P3", new MoleculeAmount {
QuantityType = QuantityType.Metabolite
} }
};
A.CallTo(() => _populationDataCollector.HasPKParameterFor("P1", "AUC")).Returns(true);
A.CallTo(() => _populationDataCollector.HasPKParameterFor("P2", "AUC")).Returns(false);
A.CallTo(() => _populationDataCollector.HasPKParameterFor("P3", "AUC")).Returns(false);
A.CallTo(_templateTask).WithReturnType <Task <PopulationAnalysis> >().Returns(_templatePopulationAnalysis);
A.CallTo(() => _entitiesInContainerRetriever.OutputsFrom(_populationDataCollector)).Returns(_cache);
A.CallTo(_dialogCreator).WithReturnType <ViewResult>().Returns(ViewResult.Yes);
A.CallTo(() => _keyPathMapper.MapFrom(_pkParameterFound.QuantityPath, QuantityType.Drug, true)).Returns(new KeyPathMap("P1"));
A.CallTo(() => _keyPathMapper.MapFrom(_quantityNotFound.QuantityPath, QuantityType.Drug, true)).Returns(new KeyPathMap("QUANTITY NOT FOUND"));
A.CallTo(() => _keyPathMapper.MapFrom(_pkParameterNotFound.QuantityPath, QuantityType.Metabolite, true)).Returns(new KeyPathMap("P3"));
}
protected override void Context()
{
_pivotAnalysis = new PopulationPivotAnalysis();
_pivotAnalysis.Add(_genderField);
_pivotAnalysis.Add(_raceField);
_pivotAnalysis.Add(_bmiField);
_pivotAnalysis.Add(_cmaxField);
var grouping = new FixedLimitsGroupingDefinition(_bmiField.Name);
grouping.SetLimits(new[] { 25d }.OrderBy(x => x));
grouping.AddItems(PopulationAnalysisHelperForSpecs.BMIGroups);
_bmiClass = new PopulationAnalysisGroupingField(grouping)
{
Name = "BMI class"
};
_pivotAnalysis.Add(_bmiClass);
_dimensionRepository = A.Fake <IDimensionRepository>();
_pivotResultCreator = A.Fake <IPivotResultCreator>();
sut = new ScatterChartDataCreator(_dimensionRepository, _pivotResultCreator);
}
protected override void Context()
{
base.Context();
_populationDataCollector = A.Fake <IPopulationDataCollector>();
_templatePopulationAnalysis = new PopulationPivotAnalysis();
_covariateFound = new PopulationAnalysisCovariateField {
Covariate = "Covariate1"
};
_covariateNotFound = new PopulationAnalysisCovariateField {
Covariate = "Covariate2"
};
_templatePopulationAnalysis.Add(_covariateFound);
_templatePopulationAnalysis.Add(_covariateNotFound);
A.CallTo(_templateTask).WithReturnType <PopulationAnalysis>().Returns(_templatePopulationAnalysis);
A.CallTo(() => _populationDataCollector.AllCovariateNames).Returns(new List <string> {
_covariateFound.Covariate
});
A.CallTo(_dialogCreator).WithReturnType <ViewResult>().Returns(ViewResult.Yes);
}