Example #1
0
        protected override void Context()
        {
            base.Context();

            var populationFieldFactory = A.Fake <PopulationAnalysisFieldFactory>();

            _covariateField = populationFieldFactory.CreateFor("Gender", _populationDataCollector);
            _populationAnalysis.Add(_covariateField);
            _genderValues = new string[] { "Male", "Female" };
            _covariateField.AddGroupingItem(new GroupingItem {
                Label = "Male", Color = PKSimColors.Male, Symbol = Symbols.Circle
            });
            _covariateField.AddGroupingItem(new GroupingItem {
                Label = "Female", Color = PKSimColors.Female, Symbol = Symbols.Diamond
            });

            var referenceSimulation = A.Fake <PopulationSimulation>().WithName("Sim");

            _referenceGroupingItem = new GroupingItem {
                Label = "Reference", Color = Color.Black, Symbol = Symbols.Circle
            };

            _populationDataCollector.ReferenceSimulation   = referenceSimulation;
            _populationDataCollector.ReferenceGroupingItem = _referenceGroupingItem;

            A.CallTo(() => _populationDataCollector.NumberOfItems).Returns(_ageValues.Count * 2);
            A.CallTo(() => _populationDataCollector.AllSimulationNames()).Returns(
                Enumerable.Repeat(referenceSimulation.Name, _ageValues.Count).Concat(
                    Enumerable.Repeat("Sim2", _ageValues.Count)).ToArray());
            A.CallTo(() => _populationDataCollector.AllValuesFor(_ageField.ParameterPath)).Returns(_ageValues.Concat(_ageValues).ToArray());
            A.CallTo(() => _populationDataCollector.AllCovariateValuesFor(_covariateField.Covariate)).Returns(_genderValues.Concat(_genderValues).Concat(_genderValues).ToArray());
        }
        protected override Task Context()
        {
            _groupingDefinitionMapper = A.Fake <GroupingDefinitionMapper>();
            _dimension           = DomainHelperForSpecs.ConcentrationDimensionForSpecs();
            _mergedDimension     = DomainHelperForSpecs.TimeDimensionForSpecs();
            _unit                = _mergedDimension.Unit("h"); // this unit is defined in the merged dimension but not in the field dimension
            _dimensionRepository = A.Fake <IDimensionRepository>();

            sut = new PopulationAnalysisFieldMapper(_groupingDefinitionMapper, _dimensionRepository);

            _groupingItem1 = new GroupingItem();

            _parameterField = new PopulationAnalysisParameterField
            {
                Name          = "P",
                ParameterPath = "A|B",
                Scaling       = Scalings.Linear,
                Dimension     = _dimension,
                DisplayUnit   = _unit
            };

            _pkParameterField = new PopulationAnalysisPKParameterField
            {
                Name         = "PK",
                Dimension    = _dimension,
                DisplayUnit  = _unit,
                PKParameter  = "AUC",
                QuantityPath = "A|B|C",
                QuantityType = QuantityType.Observer | QuantityType.Drug
            };

            _outputField = new PopulationAnalysisOutputField
            {
                Name         = "Output",
                Dimension    = _dimension,
                DisplayUnit  = _unit,
                QuantityType = QuantityType.BaseGrid,
                QuantityPath = "A|B|C",
                Color        = Color.AntiqueWhite
            };

            _groupingDefinition = new FixedLimitsGroupingDefinition("AA");
            _groupingField      = new PopulationAnalysisGroupingField(_groupingDefinition)
            {
                Name = "Grouping",
            };


            _covariateField = new PopulationAnalysisCovariateField
            {
                Name      = "Gender",
                Covariate = "Gender",
            };
            _covariateField.AddGroupingItem(_groupingItem1);

            _snapshotGroupingDefinition = new Snapshots.GroupingDefinition();
            A.CallTo(() => _groupingDefinitionMapper.MapToSnapshot(_groupingDefinition)).Returns(_snapshotGroupingDefinition);

            A.CallTo(() => _dimensionRepository.DimensionByName(_dimension.Name)).Returns(_dimension);
            A.CallTo(() => _dimensionRepository.MergedDimensionFor(A <INumericValueField> ._)).Returns(_mergedDimension);
            return(_completed);
        }