private void AddDeploymentToSeries(PicesSipperDeployment deployment,
Color color
)
{
PicesGPSDataPointList gpsData = threadConn.InstrumentDataRetrieveGPSInfo(deployment.CruiseName, deployment.StationName, deployment.DeploymentNum, (int)TimeInterval.Value);
if ((gpsData == null) || cancelRequested)
{
return;
}
PicesGPSDataPointList fliteredGPSData = gpsData.FilterOutNoise();
if (fliteredGPSData == null)
{
return;
}
if (fliteredGPSData.Count > 1)
{
DataSeriesToPlot seriesToPlot = new DataSeriesToPlot(deployment, fliteredGPSData);
seriesToPlot.LocateGPSBounds();
goalie.StartBlock();
series.Add(seriesToPlot);
goalie.EndBlock();
}
} /* AddDeploymentToSeries */
} /* CancelLoadWait */
/// <summary> Return to caller list of images that have been loaded so far by the LoadImagesThread. </summary>
/// <remarks>
/// Images are loaded by a seprate thread; these images are loaded into <paramref name="loadedImages"/>. Images
/// accumulate into it until ther are retrived by this method.
/// </remarks>
/// <returns> List of images loaded since the last call. </returns>
public PicesDataBaseImageList GetImagesAlreadyLoaded()
{
blocker.StartBlock();
PicesDataBaseImageList imagesToReturn = loadedImages;
loadedImages = new PicesDataBaseImageList();
blocker.EndBlock();
return(imagesToReturn);
}
private void RunLogAddMsg(String msg)
{
runLogGoalie.StartBlock();
if (runLogMsgQueue == null)
{
runLogMsgQueue = new Queue <String> ();
}
runLogMsgQueue.Enqueue(msg);
runLogGoalie.EndBlock();
} /* RunLogAddMsg */
} /* SaveImagesToDisk2_Load */
private void RunLogMsgQueueFlush()
{
runLogGoalie.StartBlock();
if (runLogMsgQueue != null)
{
while (runLogMsgQueue.Count > 0)
{
String msg = runLogMsgQueue.Dequeue();
RunLogText.AppendText(msg);
}
}
runLogGoalie.EndBlock();
} /* RunLogMsgQueueFlush */
} /* CancelLoadWait */
public String Status()
{
String status = "";
blocker.StartBlock();
if (cancelRequested)
{
if (loaderThreadRuning)
{
status = "Canceling";
}
else
{
status = "Canceled";
}
}
else
{
if (loaderThreadRuning)
{
status = (curSipperFileIdx + 1).ToString() + " of " + sipperFilesCount.ToString();
}
else
{
status = "Load Done";
}
}
blocker.EndBlock();
return(status);
}
private void AddDeploymentToSeries(PicesSipperDeployment deployment)
{
float[] counts = CountsByDepth(deployment, classToPlot);
if ((counts == null) || cancelRequested)
{
return;
}
float[] depthVolumeProfile = GetDepthVolumeProfile(deployment);
if (depthVolumeProfile == null)
{
return;
}
float[] density = new float[counts.Length];
for (int idx = 0; idx < counts.Length; ++idx)
{
float vol = 0;
if (idx < depthVolumeProfile.Length)
{
vol = depthVolumeProfile[idx];
}
if (vol == 0.0f)
{
density[idx] = 0.0f;
}
else
{
density[idx] = counts[idx] / vol;
}
}
String legend = deployment.CruiseName + "-" + deployment.StationName;
if (!String.IsNullOrEmpty(deployment.DeploymentNum))
{
legend += ("-" + deployment.DeploymentNum);
}
goalie.StartBlock();
series.Add(new DataSeriesToPlot(deployment, legend, density, counts, depthVolumeProfile));
goalie.EndBlock();
} /* AddDeploymentToSeries */
private void AddToSeries(char classKeyToUse)
{
if (depthVolumeProfile == null)
{
return;
}
float[] counts = CountsByDepth(classToPlot, classKeyToUse);
if ((counts == null) || cancelRequested)
{
return;
}
float[] density = new float[counts.Length];
for (int idx = 0; idx < counts.Length; ++idx)
{
float vol = 0;
if (idx < depthVolumeProfile.Length)
{
vol = depthVolumeProfile[idx];
}
if (vol == 0.0f)
{
density[idx] = 0.0f;
}
else
{
density[idx] = counts[idx] / vol;
}
}
String legend = (classKeyToUse == 'V') ? "Validated" : "Predicted";
goalie.StartBlock();
series.Add(new DataSeriesToPlot(classKeyToUse, legend, density, counts));
goalie.EndBlock();
} /* AddToSeries */
} /* SizeDistributionForAClass */
/// <summary>
/// This method will be ran as a separate thread; it is responsible for collecting all the data needed to generate the plot.
/// </summary>
private void BuildPlotData()
{
if (buildPlotDataRunning)
{
return;
}
PicesDataBase.ThreadInit();
threadConn = PicesDataBase.GetGlobalDatabaseManagerNewInstance(runLog);
buildPlotDataRunning = true;
classToPlot = PicesClassList.GetUniqueClass(ClassToPlot.Text, "");
sbyte ch = (sbyte)statistic;
downCast = null;
upCast = null;
goalie.StartBlock();
SizeDistributionForAClass(classToPlot,
IncludeSubClasses.Checked,
ref downCast,
ref upCast
);
if (cast == "Down")
{
bucketsDisplayed = downCast;
}
else if (cast == "Up")
{
bucketsDisplayed = upCast;
}
else
{
bucketsDisplayed = new PicesImageSizeDistribution(downCast);
bucketsDisplayed.AddIn(upCast, runLog);
}
integratedDensityDistribution = bucketsDisplayed.IntegratedDensityDistribution();
threadConn.Close();
threadConn = null;
GC.Collect();
PicesDataBase.ThreadEnd();
goalie.EndBlock();
if (cancelRequested)
{
statusMsgs.AddMsg("Plotting of data CANCELLED!!!");
}
else
{
statusMsgs.AddMsg("Building of plot data completed !!!");
}
buildPlotDataRunning = false;
buildPlotDataDone = true;
} /* BuildPlotData */
} /* BlockStart */
private static void BlockEnd()
{
blocker.EndBlock();
} /* BlockEnd */
} /* SuperScriptExponent */
private void UpdateChartAreas()
{
goalie.StartBlock();
bool plotLogDensity = PlotLogDensity.Checked;
String t1 = "Abundance by Size";
switch (statistic)
{
case '0': t1 = "Abundance by Size"; break;
case '1': t1 = "Abundance by Diameter (ESD)"; break;
case '2': t1 = "Abundance by Volume (EBv"; break;
case '3': t1 = "Abundance by Estimated Ellipsoid Volume"; break;
}
String t2 = cruise + "-" + station;
if (!String.IsNullOrEmpty(deployment))
{
t2 += ("-" + deployment);
}
t2 += (" " + classToPlot.Name);
t2 += " ";
t2 += (cast + "-Cast" + " Size-Range(" + sizeStart.ToString() + " - " + sizeEnd.ToString() + ")");
ProfileChart.Titles.Clear();
ProfileChart.Titles.Add(new Title(t1, Docking.Top, titleFont, Color.Black));
ProfileChart.Titles.Add(new Title(t2, Docking.Top, titleFont, Color.Black));
//ProfileChart.Titles.Add (new Title (t3, Docking.Top, titleFont, Color.Black));
ProfileChart.Series.Clear();
ChartArea ca1 = ProfileChart.ChartAreas[0];
ChartArea ca2 = ProfileChart.ChartAreas[1];
Series s = new Series("Size Distribution");
s.ChartArea = "ChartArea1";
s.ChartType = SeriesChartType.Line;
Series s2 = new Series("Volume Sampled");
s2.ChartArea = "ChartArea2";
s2.ChartType = SeriesChartType.Line;
float minX = float.MaxValue;
float minY = float.MaxValue;
float maxX = float.MinValue;
float maxY = float.MinValue;
int numDepthBins = sizeDistribution.NumDepthBins;
for (uint depthBin = 0; depthBin < numDepthBins; ++depthBin)
{
PicesImageSizeDistributionRow row = sizeDistribution.GetDepthBin(depthBin);
if (row == null)
{
continue;
}
float depth = row.Depth;
double density = 0.0;
if (depthBin < depthProfile.Length)
{
density = (double)depthProfile[depthBin];
}
if (plotLogDensity)
{
density = (float)Math.Log10(density + 1.0);
}
minX = Math.Min(minX, (float)density);
maxX = Math.Max(maxX, (float)density);
minY = Math.Min(minY, depth);
maxY = Math.Max(maxY, depth);
DataPoint dp = new DataPoint(density, depth);
s.Points.Add(dp);
double vs = 0.0;
if (depthBin < volumeSampled.Length)
{
vs = volumeSampled[depthBin];
}
DataPoint dp2 = new DataPoint(vs, depth);
s2.Points.Add(dp2);
}
s.XAxisType = AxisType.Primary;
s.YAxisType = AxisType.Primary;
s2.XAxisType = AxisType.Primary;
s2.YAxisType = AxisType.Primary;
s2.Color = Color.Black;
if (plotLogDensity)
{
ca1.AxisX.Title = SubInSuperScriptExponent("Log 10 Abundance");
}
else
{
ca1.AxisX.Title = SubInSuperScriptExponent("Abundance");
}
ca1.AxisY.Title = SubInSuperScriptExponent("Depth (Meters)");
ca1.AxisY.LabelStyle.Format = "##,##0";
ca1.AxisX.IsLogarithmic = false;
ca1.AxisX.Minimum = 0.0;
//ca1.AxisX.Maximum = maxX;
ca1.AxisX.LabelStyle.Angle = 90;
ca1.AxisX.LabelStyle.Font = axisLabelFont;
ca1.AxisX.TitleFont = axisLabelFont;
ca1.AxisY.Minimum = 0.0;
ca1.AxisY.IsLogarithmic = false;
ca1.AxisY.LabelStyle.Font = axisLabelFont;
ca1.AxisY.TitleFont = axisLabelFont;
if (plotLogDensity)
{
ca1.AxisX.LabelStyle.Format = "##,##0.0";
}
else
{
ca1.AxisX.LabelStyle.Format = "##,##0";
}
ca2.AxisX.Title = SubInSuperScriptExponent("Volume Sampled (mm-3)");
ca2.AxisX.Minimum = 0.0;
ca2.AxisX.IsLogarithmic = false;
ca2.AxisX.LabelStyle.Font = axisLabelFont;
ca2.AxisX.TitleFont = axisLabelFont;
ca2.AxisX.LabelStyle.Format = "##0.00";
ca2.AxisX.LabelStyle.Angle = 90;
s.BorderWidth = 2;
ProfileChart.Series.Add(s);
ProfileChart.Series.Add(s2);
try
{
ProfileChart.ChartAreas[0].RecalculateAxesScale();
}
catch (Exception e)
{
runLog.Writeln(e.ToString());
}
goalie.EndBlock();
} /* UpdateChartAreas */
private void AddMsgToDialogMsgQueue(String s)
{
dialogMsgGoalie.StartBlock();
dialogMsgQueue.Add(s);
dialogMsgGoalie.EndBlock();
} /* AddMsgToDialogMsgQueue */
