private void thresholdEntry_ThresholdChanged(object sender, EventArgs e)
{
if (PA == null)
{
return;
}
PA.SetPositiveThreshold(thresholdEntry.PositiveThreshold, out bool negChanged);
PA.SetNegativeThreshold(thresholdEntry.NegativeThreshold, out bool posChanged2);
ColorGrids();
mdMatrix.SetThreshold(PA.PositiveThreshold, PA.NegativeThreshold);
}
private void Run()
{
string[,] values = new string[dgQuantification.RowCount, dgQuantification.ColumnCount];
for (int iRow = 0; iRow < dgQuantification.RowCount; iRow++)
{
for (int iCol = 0; iCol < dgQuantification.ColumnCount; iCol++)
{
values[iRow, iCol] = dgQuantification[iCol, iRow].Value?.ToString() ?? "";
}
}
bool xPossible = true, yPossible = true;
PermutationArray.CheckPermutationAxis(values, ref xPossible, ref yPossible);
if (xPossible && !yPossible)
{
cbWildTypeXAxis.Checked = false;
}
else if (yPossible && !xPossible)
{
cbWildTypeXAxis.Checked = true;
}
else if (!xPossible && !yPossible)
{
MessageBox.Show("Please make sure one the axes have permutation array (each amino acid has to exist at most once)", Analyzer.ProgramName);
return;
}
;
PA = new PermutationArray(values, !cbWildTypeXAxis.Checked, cbYAxisTopToBottom.Checked, out List <string> warnings, out string error);
if (error != "")
{
MessageBox.Show(error, Analyzer.ProgramName);
return;
}
if (warnings.Count > 0)
{
warnings.Insert(0, "Warning:");
MessageBox.Show(String.Join("\r\n", warnings), Analyzer.ProgramName);
}
PA.SetPositiveThreshold(thresholdEntry.PositiveThreshold, out bool negChanged);
PA.SetNegativeThreshold(thresholdEntry.NegativeThreshold, out bool posChanged2);
LoadPeptidesFromPermutationArrayToGrid();
LoadNormalizedMatrixFromPeptideArrayToGrid();
dgPeptides.Rows[0].DefaultCellStyle = dgPeptides.ColumnHeadersDefaultCellStyle;
dgPeptides.Columns[0].DefaultCellStyle = dgPeptides.ColumnHeadersDefaultCellStyle;
dgNormalized.Rows[0].DefaultCellStyle = dgPeptides.ColumnHeadersDefaultCellStyle;
dgNormalized.Columns[0].DefaultCellStyle = dgPeptides.ColumnHeadersDefaultCellStyle;
ColorGrids();
DrawColorMatrix();
}
