/// <summary>
/// Creates a peptide object with the given information
/// </summary>
/// <param name="peptideString"></param>
/// <param name="startPos"></param>
/// <param name="endPos"></param>
public void AddPeptide(string peptideString, int startPos, int endPos)
{
Peptide peptideInstance = new Peptide(peptideString); //new and not fully-formed peptide
peptideInstance.IndexStart = startPos;
peptideInstance.IndexStop = endPos;
PeptideList.Add(peptideInstance);
}
/// <summary>
/// Stores a peptide object
/// </summary>
/// <param name="pep"></param>
public void DirectAddPeptide(Peptide pep)
{
PeptideList.Add(pep);
}