public PeptideFileAnalysisData SetPeaks(bool autoFindPeak, PeakSet peaks)
{
return(new PeptideFileAnalysisData(this)
{
AutoFindPeak = autoFindPeak, Peaks = peaks
});
}
/// <summary>
/// The output peaks.
/// </summary>
/// <param name="peakSet">
/// The peak set.
/// </param>
/// <param name="outputFile">
/// The output file.
/// </param>
public static void OutputPeaks(PeakSet peakSet, FileInfo outputFile)
{
var serializer = new DataContractSerializer(typeof(PeakSet));
using (var writer = GetXmlWriter(outputFile))
{
serializer.WriteObject(writer, peakSet);
}
}
public PeptideFileAnalysisData(DbPeptideFileAnalysis dbPeptideFileAnalysis, IEnumerable<Peak> peaks)
{
MsDataFileId = dbPeptideFileAnalysis.MsDataFile.GetId();
ValidationStatus = dbPeptideFileAnalysis.ValidationStatus;
Note = dbPeptideFileAnalysis.Note;
ChromatogramStartTime = dbPeptideFileAnalysis.ChromatogramStartTime;
ChromatogramEndTime = dbPeptideFileAnalysis.ChromatogramEndTime;
AutoFindPeak = dbPeptideFileAnalysis.AutoFindPeak;
Peaks = new PeakSet(dbPeptideFileAnalysis, peaks);
if (null != dbPeptideFileAnalysis.ChromatogramSet)
{
ChromatogramSetId = dbPeptideFileAnalysis.ChromatogramSet.Id;
}
}
public PeptideFileAnalysisData(DbPeptideFileAnalysis dbPeptideFileAnalysis, IEnumerable <Peak> peaks)
{
MsDataFileId = dbPeptideFileAnalysis.MsDataFile.GetId();
ValidationStatus = dbPeptideFileAnalysis.ValidationStatus;
Note = dbPeptideFileAnalysis.Note;
ChromatogramStartTime = dbPeptideFileAnalysis.ChromatogramStartTime;
ChromatogramEndTime = dbPeptideFileAnalysis.ChromatogramEndTime;
AutoFindPeak = dbPeptideFileAnalysis.AutoFindPeak;
Peaks = new PeakSet(dbPeptideFileAnalysis, peaks);
if (null != dbPeptideFileAnalysis.ChromatogramSet)
{
ChromatogramSetId = dbPeptideFileAnalysis.ChromatogramSet.Id;
}
}
public PeptideFileAnalysisData SetPeaks(bool autoFindPeak, PeakSet peaks)
{
return new PeptideFileAnalysisData(this) {AutoFindPeak = autoFindPeak, Peaks = peaks};
}
