public void exportToSqliteTest1()
{
if (File.Exists(sqliteOutfileName))
{
File.Delete(sqliteOutfileName);
}
Run run = new XCaliburRun(xcaliburTestfile);
ScanSetCollectionCreator scansetCreator = new ScanSetCollectionCreator(run, 6000, 6020, 1, 1, false);
scansetCreator.Create();
Task msgen = new GenericMSGenerator();
Task peakDetector = new DeconToolsPeakDetector();
((DeconToolsPeakDetector)peakDetector).StorePeakData = true;
Task exporter = new PeakListSQLiteExporter(1000000, sqliteOutfileName); //trigger of 1E5 = 310 sec (memory = 150 MB); trigger of 1E6 = 231 Sec (memory = 250 MB);
foreach (ScanSet scan in run.ScanSetCollection.ScanSetList)
{
run.CurrentScanSet = scan;
msgen.Execute(run.ResultCollection);
peakDetector.Execute(run.ResultCollection);
Stopwatch sw = new Stopwatch();
sw.Start();
exporter.Execute(run.ResultCollection);
sw.Stop();
if (sw.ElapsedMilliseconds > 5)
{
Console.WriteLine("PeakListExporter execution time = " + sw.ElapsedMilliseconds);
}
}
exporter.Cleanup();
Assert.AreEqual(true, File.Exists(sqliteOutfileName));
FileInfo fi = new FileInfo(sqliteOutfileName);
Assert.AreEqual(81920, fi.Length);
Console.Write(fi.Length);
}
public static IPeakListExporter Create(Globals.ExporterType exporterType, Globals.MSFileType fileType, int triggerValue, string outputFileName)
{
IPeakListExporter exporter;
switch (exporterType)
{
case Globals.ExporterType.Text:
exporter = new PeakListTextExporter(fileType, triggerValue, outputFileName);
break;
case Globals.ExporterType.Sqlite:
exporter = new PeakListSQLiteExporter(triggerValue, outputFileName);
break;
default:
exporter = new PeakListTextExporter(fileType, triggerValue, outputFileName);
break;
}
return(exporter);
}
