public IActionResult UpdateObservation([FromBody] ObservationModel model)
{
if (!ModelState.IsValid)
{
return(BadRequest());
}
var accountId = int.Parse(User.Claims.FirstOrDefault(c => c.Type == "id").Value);
var observation = new Observation
{
Id = model.Id,
Description = model.Description,
Latitude = model.Latitude,
Longitude = model.Longitude,
SpeciesId = model.SpeciesId,
Date = model.Date,
AccountId = model.AccountId
};
_context.Entry(observation).State = EntityState.Modified;
_context.SaveChanges();
return(Ok());
}
private ValueClass getCorrectValueType(ObservationModel observationModel)
{
if (observationModel.valueQuantity != null)
{
return(observationModel.valueQuantity);
}
if (observationModel.valueBoolean != null)
{
return(observationModel.valueBoolean);
}
if (observationModel.valueInteger != null)
{
return(observationModel.valueInteger);
}
if (observationModel.valueString != null)
{
return(observationModel.valueString);
}
if (observationModel.valueRange != null)
{
return(observationModel.valueRange);
}
return(new ValueClass {
Value = 0,
Unit = "N/A",
Code = "Error: Missing type of value from FHIR. Please update parser to include this new type",
System = new Uri("N/A")
});
}
public IActionResult AddObservation([FromBody] ObservationModel model)
{
if (!ModelState.IsValid)
{
return(BadRequest());
}
if (model.Longitude > 180)
{
model.Longitude = (model.Longitude + 180) % 360 - 180;
}
else if (model.Longitude < -180)
{
model.Longitude = (model.Longitude - 180) % 360 + 180;
}
var accountId = int.Parse(User.Claims.FirstOrDefault(c => c.Type == "id").Value);
var observation = new Observation
{
Description = model.Description,
Latitude = model.Latitude,
Longitude = model.Longitude,
SpeciesId = model.SpeciesId,
Date = model.Date,
AccountId = accountId
};
_context.Observations.Add(observation);
_context.SaveChanges();
return(Ok());
}
public void Put(string patientid, string id, [FromBody] ObservationModel model)
{
var filter = Builders <PatientModel> .Filter.And(
Builders <PatientModel> .Filter.Eq("Id", patientid));
var update = Builders <PatientModel> .Update.PopFirst(x => x.Observations.Any(y => y.ObservationId.Equals(id)))
.Push(x => x.Observations, model);
}
private static bool Validate(ObservationModel model)
{
var errorList = new List <string>();
using (var repo = _baseRepository.Get <ISequence>())
{
var id = repo.SequenceExist(model.Sequence);
if (id == null)
{
errorList.Add("The sequence isn't found");
}
var start = repo.GetStartNumber(model.Sequence);
if (start == 0 && model.Color == Colors.red)
{
errorList.Add("There isn't enough data");
}
var finished = repo.IsFinished(model.Sequence);
if (finished != null)
{
errorList.Add("The red observation should be the last");
}
if (model.Color != Colors.green && model.Color != Colors.red)
{
errorList.Add("Invalid color");
}
if (model.Color == Colors.green)
{
if (model.Numbers == null || model.Numbers.Length == 0 || model.Numbers.Length != 2)
{
errorList.Add("Invalid count of numbers");
}
else if (!Regex.IsMatch(model.Numbers[0], "^[0-1]{7}$") || !Regex.IsMatch(model.Numbers[1], "^[0-1]{7}$"))
{
errorList.Add("Invalid numbers format");
}
}
}
if (errorList.Count != 0)
{
throw new DTLException(errorList);
}
return(true);
}
//Helper method used to recursively find observations from bundles
private JObject recursiveObservationSearch(List <JObject> observations, JObject sortedObservations,
Dictionary <string, int> dateMappings)
{
for (int i = 0; i < observations.Count; i++)
{
if ((string)observations[i].SelectToken("resourceType") == "Bundle")
{
List <JObject> observationSubsearch = new List <JObject>();
int count = observations[i].SelectToken("entry").Count();
for (int j = 0; j < count; j++)
{
observationSubsearch.Add((JObject)observations[i].SelectToken("entry")[j]
.SelectToken("resource"));
}
recursiveObservationSearch(observationSubsearch, sortedObservations, dateMappings);
}
else if ((string)observations[i].SelectToken("resourceType") == "Observation")
{
ObservationModel observationModel = observations[i].ToObject <ObservationModel>();
string date = observationModel.EffectiveDateTime.ToString("yyyyMMdd");
int id;
if (dateMappings.TryGetValue(date, out id))
{
JArray items = (JArray)sortedObservations.SelectToken(date).SelectToken("items");
valueContainer(items, observationModel);
}
else
{
int newKey = sortedObservations.Count;
JArray items = new JArray();
valueContainer(items, observationModel);
JProperty entry = new JProperty(date,
new JObject
{
new JProperty("items", items)
}
);
sortedObservations.Add(entry);
dateMappings.Add(date, newKey);
}
}
}
return(sortedObservations);
}
private ObservationModel GetMappedObservation(Observation observation)
{
var resultObservation = new ObservationModel
{
Id = observation.Id
};
resultObservation.VersionId = observation.VersionId ?? "";
resultObservation.Text = observation.Code.Text;
resultObservation.SubjectId = observation.Subject.Reference.Split('/')[1];
resultObservation.IssuedDate = observation.Issued;
if (observation.Value is Quantity value)
{
resultObservation.Value = value.Value ?? 0;
resultObservation.Unit = value.Unit;
}
return(resultObservation);
}
public ObservationModule() : base("/api")
{
Get["/observation"] = _ =>
{
Stopwatch sw = new Stopwatch();
sw.Start();
var om = new ObservationModel
{
UniqueClients = Observation.GetUnique(DateTime.Now.AddHours(-1), DateTime.Now, 30),
ActiveZones = Observation.GetFloors(DateTime.Now.AddHours(-1), DateTime.Now, 30)
};
sw.Stop();
Console.WriteLine(sw.ElapsedMilliseconds.ToString());
//return Response.AsJson(o);
return NetJSON.NetJSON.Serialize(om);
};
//Get["/observations/stats"] = _ =>
//{
// var o = Observation.ToList(DateTime.Today, DateTime.Now, 25);
// var unique = o.Select(x => x.ClientMac).Distinct();
// foreach (var uq in unique)
// {
// var ob = Observation.ClientMacList(DateTime.Today, DateTime.Now, uq, 25);
// var dwell = new TimeSpan();
// foreach (Observation obi in ob)
// {
// }
// }
// var stats = new Statistics
// {
// UniqueClients = o.Select(x => x.ClientMac).Distinct().Count(),
// //AvgDwell = o.
// };
// return NetJSON.NetJSON.Serialize(null);
//}
}
public IHttpActionResult Post(string patientid, [FromBody] ObservationModel obs)
{
if (ModelState.IsValid)
{
var filter = Builders <PatientModel> .Filter.Eq("Id", patientid);
var update = Builders <PatientModel> .Update.Push(x => x.Observations, obs);
var modified = _context.Patients.UpdateOne(filter, update).ModifiedCount;
var test = _context.Patients.Find(filter).FirstOrDefault();
_factory = new VMFactory(new UrlHelper(Request));
var viewModel = _factory.Create(test);
return(Created(viewModel.Link, viewModel));
}
else
{
return(BadRequest(ModelState));
}
}
private void valueContainer(JArray values, ObservationModel observation)
{
//If an observation has more than one value, it stores it as a component of ValueQuantity properties
//We loop over them and add them to our array if this is the case
if (observation.Component != null)
{
for (int i = 0; i < observation.Component.Length; i++)
{
JObject entry = new JObject
{
new JProperty("type", observation.Code.Text),
new JProperty("value", getCorrectValueTypeForComponent(observation.Component[i]).Value),
new JProperty("unit", getCorrectValueTypeForComponent(observation.Component[i]).Unit)
};
values.Add(entry);
}
}
//The observation may be stored as a valueCodeableConcept, which is just a comment about a topic
//e.g. is the patient a smoker- the value stored might be "former smoker"
else if (observation.valueCodeableConcept != null)
{
values.Add(new JObject
{
new JProperty("type", observation.Code.Text),
new JProperty("value",
observation.valueCodeableConcept.value)
});
}
else
{
values.Add(new JObject
{
new JProperty("type", observation.Code.Text),
new JProperty("value",
getCorrectValueType(observation).Value),
new JProperty("unit",
getCorrectValueType(observation).Unit)
});
}
}
public IActionResult AddObservation([FromBody] ObservationModel model)
{
if (!ModelState.IsValid)
{
return(BadRequest());
}
try
{
var responce = _dtlManager.GetResponse(model);
return(Ok(responce));
}
catch (DTLException ex)
{
var responce = new ErrorModel {
Status = "error", Msg = ex.ErrMsg
};
return(BadRequest(responce));
}
catch (Exception ex)
{
return(StatusCode(StatusCodes.Status500InternalServerError, ex.Message));
}
}
public ResponseModel GetResponse(ObservationModel model)
{
if (Validate(model))
{
var response = new ResponseModel {
Status = "ok"
};
int id;
using (var repo = _baseRepository.Get <ISequence>())
{
id = repo.GetSequenceId(model.Sequence);
}
if (model.Color == Colors.green)
{
var first = model.Numbers[0].ToCharArray();
var second = model.Numbers[1].ToCharArray();
var fInd = new List <int>(); var sInd = new List <int>(); var temp = new List <int>(); var fRes = new List <int>(); var sRes = new List <int>();
for (int i = 0; i < first.Length; i++)
{
if (first[i] == '1')
{
fInd.Add(i);
}
if (second[i] == '1')
{
sInd.Add(i);
}
}
List <int> startNumbers;
using (var repo = _baseRepository.Get <ISequence>())
{
startNumbers = repo.GetSequenceStartNumbers(id);
}
if (startNumbers.Count == 0)
{
for (int i = 0; i < _nums.Count; i++)
{
for (int j = 0; j < _nums[i].ToCharArray().Length; j++)
{
if (_nums[i][j] == '1')
{
temp.Add(j);
}
}
if (!fInd.Except(temp).Any())
{
fRes.Add(i);
}
if (!sInd.Except(temp).Any())
{
sRes.Add(i);
}
temp = new List <int>();
}
var sNums = Map(fRes, sRes);
using (var repo = _baseRepository.Get <ISequence>())
{
sNums.ForEach(i =>
{
repo.AddSequenceStartNumber(id, i);
});
}
response.Response.Start = sNums;
}
else
{
response.Response.Start = startNumbers;
}
var res = DeleteSectors(id, fInd, sInd);
response.Response.Missing[0] = ConstructResult(res.Item1);
response.Response.Missing[1] = ConstructResult(res.Item2);
}
else
{
int start;
using (var repo = _baseRepository.Get <ISequence>())
{
start = repo.GetStartNumber(model.Sequence);
repo.SetFinished(model.Sequence);
}
response.Response.Start = new List <int> {
start - 2
};
using (var repo = _baseRepository.Get <IObservation>())
{
response.Response.Missing[0] = ConstructResult(repo.GetFirstSector(id).ToList());
response.Response.Missing[1] = ConstructResult(repo.GetSecondSector(id).ToList());
}
}
return(response);
}
return(null);
}