internal static Observation ToFhirInternal(VitalSigns vitalSigns, Observation observation)
{
observation.Category = new List <CodeableConcept> {
FhirCategories.VitalSigns
};
observation.Effective = new FhirDateTime(vitalSigns.When.ToLocalDateTime().ToDateTimeUnspecified());
observation.Code = HealthVaultVocabularies.VitalSigns;
foreach (VitalSignsResultType vitalSignsResult in vitalSigns.VitalSignsResults)
{
var vitalSign = VitalSignsResultToFhir(vitalSignsResult);
vitalSign.Id = $"vitalsign-{Guid.NewGuid()}";
observation.Contained.Add(vitalSign);
var related = new Observation.RelatedComponent();
related.Type = Observation.ObservationRelationshipType.HasMember;
related.Target = new ResourceReference(vitalSign.Id);
}
return(observation);
}
public void Setup()
{
Server = StaticTestData.StartupServer();
clientFhir = new Hl7.Fhir.Rest.FhirClient(StaticTestData.FhirEndpoint(), false);
clientFhir.Timeout = 1000 * 720; // give the call a while to execute (particularly while debugging).
//This Set up creates an Observation linked to a Patient as the 'subject' and an Organization as the 'performer'
// Observation1
// --> Patient
// --> Organization - > Endpoint
// --> Observation2
// ----> Observation3
//Add a Endpoint resource
//Loop only here for load testing
for (int i = 0; i < 1; i++)
{
Endpoint EndpointOnex = new Endpoint();
EndpointOnex.Name = EndpointOneName;
EndpointOneIdentifer = Guid.NewGuid().ToString();
EndpointOnex.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, EndpointOneIdentifer));
Endpoint EndPointOneResult = null;
try
{
EndPointOneResult = clientFhir.Create(EndpointOnex);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(EndPointOneResult, "Resource created but returned resource is null");
EndpointOneResourceId = EndPointOneResult.Id;
}
//Add a Endpoint resource
Endpoint EndpointTwo = new Endpoint();
EndpointTwo.Name = EndpointOneName;
string EndpointTwoIdentifer = Guid.NewGuid().ToString();
EndpointTwo.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, EndpointTwoIdentifer));
Endpoint EndPointTwoResult = null;
try
{
EndPointTwoResult = clientFhir.Create(EndpointTwo);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(EndPointTwoResult, "Resource created but returned resource is null");
string EndpointTwoResourceId = EndPointTwoResult.Id;
//Add a Organization resource by Update
Organization OrganizationOne = new Organization();
OrganizationOne.Name = OrganizationOneName;
OrganizationOneIdentifer = Guid.NewGuid().ToString();
OrganizationOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, OrganizationOneIdentifer));
OrganizationOne.Endpoint = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Endpoint.GetLiteral()}/{EndpointOneResourceId}")
};
Organization OrganizationOneResult = null;
try
{
OrganizationOneResult = clientFhir.Create(OrganizationOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(OrganizationOneResult, "Resource created but returned resource is null");
OrganizationOneResourceId = OrganizationOneResult.Id;
//Patient where Obs.performer -> Org.name
// Add a Patient to Link to a Observation below ================================
//Loop only here for load testing debugging
for (int i = 0; i < 10; i++)
{
Patient PatientOne = new Patient();
PatientOne.Name.Add(HumanName.ForFamily(PatientOneFamily).WithGiven("Test"));
PatientOne.BirthDateElement = new Date("1979-09-30");
PatientOneMRNIdentifer = Guid.NewGuid().ToString();
PatientOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, PatientOneMRNIdentifer));
PatientOne.Gender = AdministrativeGender.Unknown;
PatientOne.ManagingOrganization = new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}");
Patient PatientResult = null;
try
{
PatientResult = clientFhir.Create(PatientOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(PatientResult, "Resource created but returned resource is null");
PatientResourceId = PatientResult.Id;
}
//Here we set up 3 observations linked in a chain Obs1 -> Obs2 - > Obs3 to test recursive includes
// Add Observation 3 Linked to no other observation
// This is to test recursive includes
Observation ObsResourceThree = new Observation();
ObsResourceThree.Status = ObservationStatus.Final;
ObsResourceThree.Code = new CodeableConcept("http://somesystem.net/ObSystem", "WCC");
ObservationThreeIdentifer = Guid.NewGuid().ToString();
ObsResourceThree.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, ObservationTwoIdentifer));
ObsResourceThree.Subject = new ResourceReference($"{ResourceType.Patient.GetLiteral()}/{PatientResourceId}");
ObsResourceThree.Performer = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}")
};
Observation ObservationThreeResult = null;
try
{
ObservationThreeResult = clientFhir.Create(ObsResourceThree);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Observation resource two create: " + Exec.Message);
}
Assert.NotNull(ObservationThreeResult, "Resource created but returned resource is null");
ObservationThreeResourceId = ObservationThreeResult.Id;
ObservationThreeResult = null;
// Add Observation 2 Linked to the Observation3 above and Patient above
// This is to test recursive includes
Observation ObsResourceTwo = new Observation();
ObsResourceTwo.Status = ObservationStatus.Final;
ObsResourceTwo.Code = new CodeableConcept("http://somesystem.net/ObSystem", "WCC");
ObservationTwoIdentifer = Guid.NewGuid().ToString();
ObsResourceTwo.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, ObservationTwoIdentifer));
ObsResourceTwo.Subject = new ResourceReference($"{ResourceType.Patient.GetLiteral()}/{PatientResourceId}");
ObsResourceTwo.Performer = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}")
};
ObsResourceTwo.Related = new List <Observation.RelatedComponent>();
var RelatedArtifact2 = new Observation.RelatedComponent();
RelatedArtifact2.Target = new ResourceReference($"{ResourceType.Observation.GetLiteral()}/{ObservationThreeResourceId}");
ObsResourceTwo.Related.Add(RelatedArtifact2);
Observation ObservationTwoResult = null;
try
{
ObservationTwoResult = clientFhir.Create(ObsResourceTwo);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on Observation resource two create: " + Exec.Message);
}
Assert.NotNull(ObservationTwoResult, "Resource created but returned resource is null");
ObservationTwoResourceId = ObservationTwoResult.Id;
ObservationTwoResult = null;
// Add Observation1 linked to Observation 2 above and the Patient above ================================
Observation ObsResourceOne = new Observation();
ObsResourceOne.Status = ObservationStatus.Final;
ObsResourceOne.Code = new CodeableConcept("http://somesystem.net/ObSystem", "HB");
ObservationOneIdentifer = Guid.NewGuid().ToString();
ObsResourceOne.Identifier.Add(new Identifier(StaticTestData.TestIdentiferSystem, ObservationOneIdentifer));
ObsResourceOne.Subject = new ResourceReference($"{ResourceType.Patient.GetLiteral()}/{PatientResourceId}");
ObsResourceOne.Performer = new List <ResourceReference>()
{
new ResourceReference($"{ResourceType.Organization.GetLiteral()}/{OrganizationOneResourceId}")
};
ObsResourceOne.Related = new List <Observation.RelatedComponent>();
var RelatedArtifact1 = new Observation.RelatedComponent();
RelatedArtifact1.Target = new ResourceReference($"{ResourceType.Observation.GetLiteral()}/{ObservationTwoResourceId}");
ObsResourceOne.Related.Add(RelatedArtifact1);
Observation ObservationOneResult = null;
try
{
ObservationOneResult = clientFhir.Create(ObsResourceOne);
}
catch (Exception Exec)
{
Assert.True(false, "Exception thrown on resource Create: " + Exec.Message);
}
Assert.NotNull(ObservationOneResult, "Resource created but returned resource is null");
ObservationOneResourceId = ObservationOneResult.Id;
ObservationOneResult = null;
}
