public void Transcribe_TestCases(NucleotideSequence incoming, NucleotideSequence expected)
{
var actual = incoming.Transcribe();
Assert.AreEqual(expected.Sequence, actual.Sequence);
CollectionAssert.AreEquivalent(expected.SymbolCounts, actual.SymbolCounts);
Assert.AreEqual(expected.ActiveAlphabet, actual.ActiveAlphabet);
CollectionAssert.AreEquivalent(expected.AllowedSymbols, actual.AllowedSymbols);
}
public void ComplementAndReverseComplementTests(NucleotideSequence incoming, NucleotideSequence expectedComplement, NucleotideSequence expectedReverseComplement)
{
var computedComplement = incoming.Complement();
var computedReverseComplement = incoming.ReverseComplement();
Assert.AreEqual(expectedComplement.Sequence, computedComplement.Sequence);
CollectionAssert.AreEquivalent(expectedComplement.SymbolCounts, computedComplement.SymbolCounts);
Assert.AreEqual(computedReverseComplement.Sequence, expectedReverseComplement.Sequence);
}
public void Tag_Tests(NucleotideSequence incoming, IEnumerable <string> incomingTags)
{
var expected = new HashSet <string>(incomingTags);
CollectionAssert.AreEquivalent(incoming.Tags, expected);
}
public long NucleotideCount_Tests(NucleotideSequence haystack, Nucleotide needle)
{
return(haystack.NucleotideCount(needle));
}
public long ComputeHammingDistanceTest(NucleotideSequence a, NucleotideSequence b)
{
return(NucleotideSequence.CalculateHammingDistance(a, b));
}
public bool EqualityTests(NucleotideSequence a, NucleotideSequence b)
{
return(a.Equals(b));
}
public string ProteinSequence_Tests(NucleotideSequence seq)
{
var translation = seq.Translate();
return(translation.Sequence);
}
