private void PreparePeptideProteinDictionary()
{
Console.WriteLine("Generating peptide protein dictionary");
if (peptideProteinDictionary.Keys.Count > 0)
{
Console.WriteLine("\tNo need for this.");
return;
}
//Fill protein peptide dictionary
peptideProteinDictionary = new Dictionary <string, List <string> >();
List <string> allPeptides = (from qp in myQuantPkgs
from p in qp.MyQuants
select PatternTools.pTools.CleanPeptide(p.Key, true)).Distinct().ToList();
foreach (string peptide in allPeptides)
{
List <FastaItem> theItems = MyFastaItems.FindAll(a => a.Sequence.Contains(peptide));
peptideProteinDictionary.Add(peptide, theItems.Select(a => a.SequenceIdentifier).ToList());
}
Console.WriteLine("Done Generating dictionary");
}
private void PrepareProteinPeptideDictionary()
{
//Fill protein peptide dictionary
Console.WriteLine("Generating protein peptide dictionary");
if (proteinPeptideDictionary.Keys.Count > 0)
{
Console.WriteLine("\tNo need for this.");
}
proteinPeptideDictionary = new Dictionary <string, List <string> >();
List <string> allPeptides = (from qp in myQuantPkgs
from p in qp.MyQuants
select p.Key).Distinct().ToList();
foreach (string peptide in allPeptides)
{
List <FastaItem> theItems = MyFastaItems.FindAll(a => a.Sequence.Contains(PatternTools.pTools.CleanPeptide(peptide, true)));
foreach (FastaItem fi in theItems)
{
if (proteinPeptideDictionary.ContainsKey(fi.SequenceIdentifier))
{
proteinPeptideDictionary[fi.SequenceIdentifier].Add(peptide);
}
else
{
proteinPeptideDictionary.Add(fi.SequenceIdentifier, new List <string>()
{
peptide
});
}
}
}
Console.WriteLine("Done Generating dictionary");
}