/// <summary>
/// Get the Blosum90 alignment score.
/// </summary>
/// <returns></returns>
public double GetUnmaskedBlosum90AlignmentScore()
{
var blosum = new Bio.SimilarityMatrices.SimilarityMatrix(SimilarityMatrices.SimilarityMatrix.StandardSimilarityMatrix.Blosum90);
return(MultiSequenceAlignment.MultipleAlignmentScoreFunction(this.UnmaskedAminoAcidAlignment.Sequences.ToList(), blosum, -5, -2));
}
