public void RaceNameToRaceCode_Test(string input, string expected)
{
Assert.Equal(expected, mortalityData.RaceNameToRaceCode(input));
}
/// <summary>Convert Nightingale style JSON string to FHIR VRDR <c>DeathRecord</c>,</summary>
public static DeathRecord FromNightingale(string json)
{
// Load in Nightingale string and serialize to Dictionary<string, string>
Dictionary <string, string> values = JsonConvert.DeserializeObject <Dictionary <string, string> >(json);
// Start building the record
DeathRecord deathRecord = new DeathRecord();
SetStringValueDeathRecordString(deathRecord, "Identifier", GetValue(values, "certificateNumber"));
SetYesNoValueDeathRecordCode(deathRecord, "MilitaryService", GetValue(values, "armedForcesService.armedForcesService"));
SetYesNoValueDeathRecordCode(deathRecord, "AutopsyPerformedIndicator", GetValue(values, "autopsyPerformed.autopsyPerformed"));
SetYesNoValueDeathRecordCode(deathRecord, "AutopsyResultsAvailable", GetValue(values, "autopsyAvailableToCompleteCauseOfDeath.autopsyAvailableToCompleteCauseOfDeath"));
SetYesNoValueDeathRecordCode(deathRecord, "TobaccoUse", GetValue(values, "didTobaccoUseContributeToDeath.didTobaccoUseContributeToDeath"));
SetYesNoValueDeathRecordCode(deathRecord, "ExaminerContacted", GetValue(values, "meOrCoronerContacted.meOrCoronerContacted"));
if (GetValue(values, "certifierType.certifierType") == "Physician (Certifier)")
{
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "code", "434641000124105");
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "display", "Physician");
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "system", "http://snomed.info/sct");
}
else if (GetValue(values, "certifierType.certifierType") == "Physician (Pronouncer and Certifier)")
{
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "code", "434651000124107");
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "display", "Physician (Pronouncer and Certifier)");
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "system", "http://snomed.info/sct");
}
else if (GetValue(values, "certifierType.certifierType") == "Medical Examiner")
{
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "code", "440051000124108");
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "display", "Medical Examiner");
SetStringValueDeathRecordDictionary(deathRecord, "CertificationRole", "system", "http://snomed.info/sct");
}
SetStringValueDeathRecordString(deathRecord, "COD1A", GetValue(values, "cod.immediate"));
SetStringValueDeathRecordString(deathRecord, "INTERVAL1A", GetValue(values, "cod.immediateInt"));
SetStringValueDeathRecordString(deathRecord, "COD1B", GetValue(values, "cod.under1"));
SetStringValueDeathRecordString(deathRecord, "INTERVAL1B", GetValue(values, "cod.under1Int"));
SetStringValueDeathRecordString(deathRecord, "COD1C", GetValue(values, "cod.under2"));
SetStringValueDeathRecordString(deathRecord, "INTERVAL1C", GetValue(values, "cod.under2Int"));
SetStringValueDeathRecordString(deathRecord, "COD1D", GetValue(values, "cod.under3"));
SetStringValueDeathRecordString(deathRecord, "INTERVAL1D", GetValue(values, "cod.under3Int"));
SetStringValueDeathRecordString(deathRecord, "ContributingConditions", GetValue(values, "contributingCauses.contributingCauses"));
SetStringValueDeathRecordString(deathRecord, "DateOfBirth", GetValue(values, "dateOfBirth.dateOfBirth"));
SetStringValueDeathRecordString(deathRecord, "DateOfDeath", GetValue(values, "dateOfDeath.dateOfDeath"));
SetStringValueDeathRecordString(deathRecord, "DateOfDeathPronouncement", GetValue(values, "datePronouncedDead.datePronouncedDead"));
SetStringValueDeathRecordDictionary(deathRecord, "Residence", "addressLine1", GetValue(values, "decedentAddress.street"));
SetStringValueDeathRecordDictionary(deathRecord, "Residence", "addressCity", GetValue(values, "decedentAddress.city"));
SetStringValueDeathRecordDictionary(deathRecord, "Residence", "addressState", GetValue(values, "decedentAddress.state"));
SetStringValueDeathRecordDictionary(deathRecord, "Residence", "addressZip", GetValue(values, "decedentAddress.zip"));
SetStringValueDeathRecordDictionary(deathRecord, "Residence", "addressCountry", "United States");
SetStringValueDeathRecordString(deathRecord, "InjuryLocationName", GetValue(values, "detailsOfInjuryLocation.name"));
SetStringValueDeathRecordDictionary(deathRecord, "InjuryLocationAddress", "addressLine1", GetValue(values, "detailsOfInjuryLocation.street"));
SetStringValueDeathRecordDictionary(deathRecord, "InjuryLocationAddress", "addressCity", GetValue(values, "detailsOfInjuryLocation.city"));
SetStringValueDeathRecordDictionary(deathRecord, "InjuryLocationAddress", "addressState", GetValue(values, "detailsOfInjuryLocation.state"));
SetStringValueDeathRecordDictionary(deathRecord, "InjuryLocationAddress", "addressZip", GetValue(values, "detailsOfInjuryLocation.zip"));
SetStringValueDeathRecordDictionary(deathRecord, "InjuryLocationAddress", "addressCountry", "United States");
SetStringValueDeathRecordString(deathRecord, "DeathLocationName", GetValue(values, "locationOfDeath.name"));
SetStringValueDeathRecordDictionary(deathRecord, "DeathLocationAddress", "addressLine1", GetValue(values, "locationOfDeath.street"));
SetStringValueDeathRecordDictionary(deathRecord, "DeathLocationAddress", "addressCity", GetValue(values, "locationOfDeath.city"));
SetStringValueDeathRecordDictionary(deathRecord, "DeathLocationAddress", "addressState", GetValue(values, "locationOfDeath.state"));
SetStringValueDeathRecordDictionary(deathRecord, "DeathLocationAddress", "addressZip", GetValue(values, "locationOfDeath.zip"));
SetStringValueDeathRecordDictionary(deathRecord, "DeathLocationAddress", "addressCountry", "United States");
SetStringValueDeathRecordString(deathRecord, "FuneralHomeName", GetValue(values, "funeralFacility.name"));
SetStringValueDeathRecordDictionary(deathRecord, "FuneralHomeAddress", "addressLine1", GetValue(values, "funeralFacility.street"));
SetStringValueDeathRecordDictionary(deathRecord, "FuneralHomeAddress", "addressCity", GetValue(values, "funeralFacility.city"));
SetStringValueDeathRecordDictionary(deathRecord, "FuneralHomeAddress", "addressState", GetValue(values, "funeralFacility.state"));
SetStringValueDeathRecordDictionary(deathRecord, "FuneralHomeAddress", "addressZip", GetValue(values, "funeralFacility.zip"));
SetStringValueDeathRecordDictionary(deathRecord, "FuneralHomeAddress", "addressCountry", "United States");
SetStringValueDeathRecordDictionary(deathRecord, "CertifierAddress", "addressLine1", GetValue(values, "personCompletingCauseOfDeathAddress.street"));
SetStringValueDeathRecordDictionary(deathRecord, "CertifierAddress", "addressCity", GetValue(values, "personCompletingCauseOfDeathAddress.city"));
SetStringValueDeathRecordDictionary(deathRecord, "CertifierAddress", "addressState", GetValue(values, "personCompletingCauseOfDeathAddress.state"));
SetStringValueDeathRecordDictionary(deathRecord, "CertifierAddress", "addressZip", GetValue(values, "personCompletingCauseOfDeathAddress.zip"));
SetStringValueDeathRecordDictionary(deathRecord, "CertifierAddress", "addressCountry", "United States");
SetStringValueDeathRecordDictionary(deathRecord, "PlaceOfBirth", "addressCity", GetValue(values, "placeOfBirth.city"));
SetStringValueDeathRecordDictionary(deathRecord, "PlaceOfBirth", "addressState", GetValue(values, "placeOfBirth.state"));
SetStringValueDeathRecordDictionary(deathRecord, "PlaceOfBirth", "addressZip", GetValue(values, "placeOfBirth.zip"));
SetStringValueDeathRecordDictionary(deathRecord, "PlaceOfBirth", "addressCountry", "United States");
SetStringValueDeathRecordString(deathRecord, "DispositionLocationName", GetValue(values, "placeOfDisposition.name"));
SetStringValueDeathRecordDictionary(deathRecord, "DispositionLocationAddress", "addressCity", GetValue(values, "placeOfDisposition.city"));
SetStringValueDeathRecordDictionary(deathRecord, "DispositionLocationAddress", "addressState", GetValue(values, "placeOfDisposition.state"));
SetStringValueDeathRecordDictionary(deathRecord, "DispositionLocationAddress", "addressCountry", GetValue(values, "placeOfDisposition.country"));
List <string> names = new List <string>();
if (!String.IsNullOrWhiteSpace(GetValue(values, "decedentName.firstName")))
{
names.Add(GetValue(values, "decedentName.firstName"));
}
if (!String.IsNullOrWhiteSpace(GetValue(values, "decedentName.middleName")))
{
names.Add(GetValue(values, "decedentName.middleName"));
}
deathRecord.GivenNames = names.ToArray();
SetStringValueDeathRecordString(deathRecord, "FamilyName", GetValue(values, "decedentName.lastName"));
List <string> cnames = new List <string>();
if (!String.IsNullOrWhiteSpace(GetValue(values, "personCompletingCauseOfDeathName.firstName")))
{
cnames.Add(GetValue(values, "personCompletingCauseOfDeathName.firstName"));
}
if (!String.IsNullOrWhiteSpace(GetValue(values, "personCompletingCauseOfDeathName.middleName")))
{
cnames.Add(GetValue(values, "personCompletingCauseOfDeathName.middleName"));
}
deathRecord.CertifierGivenNames = cnames.ToArray();
SetStringValueDeathRecordString(deathRecord, "CertifierFamilyName", GetValue(values, "personCompletingCauseOfDeathName.lastName"));
SetStringValueDeathRecordString(deathRecord, "InjuryLocationDescription", GetValue(values, "detailsOfInjury.detailsOfInjury"));
switch (GetValue(values, "education.education"))
{
case "8th grade or less":
case "9th through 12th grade; no diploma":
Dictionary <string, string> edu = new Dictionary <string, string>();
edu.Add("code", "SEC");
edu.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
edu.Add("display", "Some secondary or high school education");
deathRecord.EducationLevel = edu;
break;
case "High School Graduate or GED Completed":
edu = new Dictionary <string, string>();
edu.Add("code", "HS");
edu.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
edu.Add("display", "High School or secondary school degree complete");
deathRecord.EducationLevel = edu;
break;
case "Some college credit, but no degree":
edu = new Dictionary <string, string>();
edu.Add("code", "PB");
edu.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
edu.Add("display", "Some post-baccalaureate education");
deathRecord.EducationLevel = edu;
break;
case "Associate Degree":
edu = new Dictionary <string, string>();
edu.Add("code", "ASSOC");
edu.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
edu.Add("display", "Associate's or technical degree complete");
deathRecord.EducationLevel = edu;
break;
case "Bachelor's Degree":
edu = new Dictionary <string, string>();
edu.Add("code", "BD");
edu.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
edu.Add("display", "College or baccalaureate degree complete");
deathRecord.EducationLevel = edu;
break;
case "Master's Degree":
edu = new Dictionary <string, string>();
edu.Add("code", "GD");
edu.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
edu.Add("display", "Graduate or professional Degree complete");
deathRecord.EducationLevel = edu;
break;
case "Doctorate Degree or Professional Degree":
edu = new Dictionary <string, string>();
edu.Add("code", "POSTG");
edu.Add("system", "http://terminology.hl7.org/CodeSystem/v3-EducationLevel");
edu.Add("display", "Doctoral or post graduate education");
deathRecord.EducationLevel = edu;
break;
}
SetStringValueDeathRecordString(deathRecord, "MotherMaidenName", GetValue(values, "motherName.lastName"));
switch (GetValue(values, "mannerOfDeath.mannerOfDeath"))
{
case "Natural":
Dictionary <string, string> mod = new Dictionary <string, string>();
mod.Add("code", "38605008");
mod.Add("display", "Natural");
deathRecord.MannerOfDeathType = mod;
break;
case "Accident":
mod = new Dictionary <string, string>();
mod.Add("code", "7878000");
mod.Add("display", "Accident");
deathRecord.MannerOfDeathType = mod;
break;
case "Suicide":
mod = new Dictionary <string, string>();
mod.Add("code", "44301001");
mod.Add("display", "Suicide");
deathRecord.MannerOfDeathType = mod;
break;
case "Homicide":
mod = new Dictionary <string, string>();
mod.Add("code", "27935005");
mod.Add("display", "Homicide");
deathRecord.MannerOfDeathType = mod;
break;
case "Pending Investigation":
mod = new Dictionary <string, string>();
mod.Add("code", "185973002");
mod.Add("display", "Pending Investigation");
deathRecord.MannerOfDeathType = mod;
break;
case "Could not be determined":
mod = new Dictionary <string, string>();
mod.Add("code", "65037004");
mod.Add("display", "Could not be determined");
deathRecord.MannerOfDeathType = mod;
break;
}
switch (GetValue(values, "maritalStatus.maritalStatus"))
{
case "Married":
Dictionary <string, string> mar = new Dictionary <string, string>();
mar.Add("code", "M");
mar.Add("system", "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
mar.Add("display", "Married");
deathRecord.MaritalStatus = mar;
break;
case "Legally Separated":
mar = new Dictionary <string, string>();
mar.Add("code", "L");
mar.Add("system", "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
mar.Add("display", "Legally Separated");
deathRecord.MaritalStatus = mar;
break;
case "Widowed":
mar = new Dictionary <string, string>();
mar.Add("code", "W");
mar.Add("system", "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
mar.Add("display", "Widowed");
deathRecord.MaritalStatus = mar;
break;
case "Divorced":
mar = new Dictionary <string, string>();
mar.Add("code", "D");
mar.Add("system", "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
mar.Add("display", "Divorced");
deathRecord.MaritalStatus = mar;
break;
case "Never Married":
mar = new Dictionary <string, string>();
mar.Add("code", "S");
mar.Add("system", "http://terminology.hl7.org/CodeSystem/v3-MaritalStatus");
mar.Add("display", "Never Married");
deathRecord.MaritalStatus = mar;
break;
case "unknown":
mar = new Dictionary <string, string>();
mar.Add("code", "UNK");
mar.Add("system", "http://terminology.hl7.org/CodeSystem/v3-NullFlavor");
mar.Add("display", "unknown");
deathRecord.MaritalStatus = mar;
break;
}
if (GetValue(values, "sex.sex") == "Male")
{
deathRecord.BirthSex = "M";
}
else if (GetValue(values, "sex.sex") == "Female")
{
deathRecord.BirthSex = "F";
}
if (GetValue(values, "ssn.ssn1") != null && GetValue(values, "ssn.ssn2") != null && GetValue(values, "ssn.ssn3") != null)
{
SetStringValueDeathRecordString(deathRecord, "SSN", GetValue(values, "ssn.ssn1") + GetValue(values, "ssn.ssn2") + GetValue(values, "ssn.ssn3"));
}
if (!String.IsNullOrWhiteSpace(GetValue(values, "race.race.specify")))
{
MortalityData mdata = MortalityData.Instance;
List <Tuple <string, string> > rtuples = new List <Tuple <string, string> >();
string[] races = JsonConvert.DeserializeObject <string[]>(GetValue(values, "race.race.specify"));
foreach (string r in races)
{
string c = mdata.RaceNameToRaceCode(r);
if (!String.IsNullOrWhiteSpace(c))
{
rtuples.Add(Tuple.Create(r, c));
}
}
deathRecord.Race = rtuples.ToArray();
}
return(deathRecord);
}
