public void ClearAtomHighlights()
{
if (Molecule1 != null)
{
Molecule1.ClearAtomHighlights();
}
if (Molecule2 != null)
{
Molecule2.ClearAtomHighlights();
}
}
// atom highlights are generally re-rendered only when interaction settings have been updated
public void RenderAtomHighlights(MolecularInteractionSettings interactionSettings)
{
List <HighLightedAtom> molecule1Atoms = new List <HighLightedAtom>();
List <HighLightedAtom> molecule2Atoms = new List <HighLightedAtom>();
if (interactions != null)
{
foreach (AtomInteraction interaction in interactions)
{
if (interaction.InteractionColour == null)
{
continue;
}
if ((interaction.InteractionType == InteractionType.Attractive && !interactionSettings.ShowAttractiveInteractions) ||
(interaction.InteractionType == InteractionType.Stable && !interactionSettings.ShowStableInteractions) ||
(interaction.InteractionType == InteractionType.Repulsive && !interactionSettings.ShowRepulsiveInteractions))
{
continue;
}
HighLightedAtom atom1 = new HighLightedAtom();
atom1.Atom = interaction.Atom1;
atom1.HighlightColor = (Color)interaction.InteractionColour;
molecule1Atoms.Add(atom1);
HighLightedAtom atom2 = new HighLightedAtom();
atom2.Atom = interaction.Atom2;
atom2.HighlightColor = (Color)interaction.InteractionColour;
molecule2Atoms.Add(atom2);
}
}
Molecule1.RenderAtomHighlights(molecule1Atoms);
Molecule2.RenderAtomHighlights(molecule2Atoms);
}