/// <summary>
/// Used to test green artifact generation.
/// </summary>
/// <returns></returns>
public static MockObjectRepository GenerateGreenMockDataset1()
{
MockObjectRepository mockRepo = new MockObjectRepository();
mockRepo.FindOrCreateCodeSystem("SNOMED CT", "6.96");
mockRepo.FindOrCreateCodeSystem("HL7ActStatus", "113883.5.14");
mockRepo.FindOrCreateValueSet("GenderCode", "11.1");
ImplementationGuideType igType = mockRepo.FindOrCreateImplementationGuideType(Constants.IGTypeNames.CDA, Constants.IGTypeSchemaLocations.CDA, Constants.IGTypePrefixes.CDA, Constants.IGTypeNamespaces.CDA);
TemplateType docType = mockRepo.FindOrCreateTemplateType(igType, "Document", "ClinicalDocument", "ClinicalDocument", 1);
TemplateType sectionType = mockRepo.FindOrCreateTemplateType(igType, "Section", "section", "Section", 2);
mockRepo.FindOrCreateDataType(igType, "II");
mockRepo.FindOrCreateDataType(igType, "INT");
mockRepo.FindOrCreateDataType(igType, "TS");
mockRepo.FindOrCreateDataType(igType, "CE");
ImplementationGuide ig1 = mockRepo.FindOrCreateImplementationGuide(igType, "Test IG 1");
Template t1 = mockRepo.CreateTemplate("urn:oid:1.2.3.4", docType, "Test Template 1", ig1, null, null, null);
TemplateConstraint tc1 = mockRepo.AddConstraintToTemplate(t1, null, null, "code", "SHALL", "1..1", "CE");
TemplateConstraint tc1_1 = mockRepo.AddConstraintToTemplate(t1, tc1, null, "@code", "SHALL", "1..1", null, "SHALL", "1234-x", "Test Doc Code", null, null);
TemplateConstraint tc1_2 = mockRepo.AddConstraintToTemplate(t1, tc1, null, "@codeSystem", "SHALL", "1..1", null, "SHALL", "1.5.4.2.3", "Test Code System OID", null, null);
TemplateConstraint tc2 = mockRepo.AddConstraintToTemplate(t1, null, null, "setId", "SHALL", "1..1", "II");
TemplateConstraint tc3 = mockRepo.AddConstraintToTemplate(t1, null, null, "versionNumber", "SHALL", "1..1", "INT");
TemplateConstraint tc4 = mockRepo.AddConstraintToTemplate(t1, null, null, "recordTarget", "SHALL", "1..*", null);
TemplateConstraint tc4_1 = mockRepo.AddConstraintToTemplate(t1, tc4, null, "patientRole", "SHALL", "1..1", null);
TemplateConstraint tc4_1_1 = mockRepo.AddConstraintToTemplate(t1, tc4_1, null, "id", "SHALL", "1..1", "II");
TemplateConstraint tc4_1_2 = mockRepo.AddConstraintToTemplate(t1, tc4_1, null, "patient", "SHALL", "1..1", null);
TemplateConstraint tc4_1_2_1 = mockRepo.AddConstraintToTemplate(t1, tc4_1_2, null, "birthTime", "SHALL", "1..1", "TS");
TemplateConstraint tc4_1_2_2 = mockRepo.AddConstraintToTemplate(t1, tc4_1_2, null, "administrativeGenderCode", "SHALL", "1..1", "CE");
return(mockRepo);
}
public void GenerateXMLTest()
{
MockObjectRepository mockTdb = new MockObjectRepository();
mockTdb.InitializeCDARepository();
ImplementationGuide ig = mockTdb.FindOrCreateImplementationGuide(Constants.IGTypeNames.CDA, "Test IG", null, DateTime.Now);
Template template = mockTdb.CreateTemplate("urn:oid:2.16.22.22.11", "Document", "Test Doc Type", ig, "ClinicalDocument", "ClinicalDocument", "Test Description");
var tca1 = mockTdb.AddConstraintToTemplate(template, null, null, "@classCode", "SHALL", "1..1", value: "test1");
var tca2 = mockTdb.AddConstraintToTemplate(template, null, null, "@moodCode", "SHALL", "1..1", value: "test2");
var tc1 = mockTdb.AddConstraintToTemplate(template, null, null, "entryRelationship", "SHALL", "1..1");
var tc2 = mockTdb.AddConstraintToTemplate(template, tc1, null, "observation", "SHOULD", "0..1");
var tc3 = mockTdb.AddConstraintToTemplate(template, tc2, null, "value", "SHALL", "1..1", "CD", value: "4321", displayName: "Test");
template.TemplateSamples = new System.Data.Entity.Core.Objects.DataClasses.EntityCollection <TemplateSample>();
template.TemplateSamples.Add(new TemplateSample()
{
XmlSample = "<test><example>VALUE</example></test>"
});
List <Template> templates = new List <Template>();
templates.Add(template);
IGSettingsManager igSettings = new IGSettingsManager(mockTdb, ig.Id);
TemplateExporter exporter = new TemplateExporter(templates, mockTdb, ig.Id);
string export = exporter.GenerateXML();
Assert.IsFalse(string.IsNullOrEmpty(export));
}
public void Setup()
{
this.tdb = new MockObjectRepository();
MemoryStream docStream = new MemoryStream();
WordprocessingDocument document = WordprocessingDocument.Create(docStream, WordprocessingDocumentType.Document);
this.body = new Body();
this.mainPart = document.AddMainDocumentPart();
this.mainPart.Document = new Document(this.body);
// Dummy Data
CodeSystem snomed = this.tdb.FindOrCreateCodeSystem("SNOMED-CT", "1.2.3.4");
this.vs1 = this.tdb.FindOrCreateValueSet("ValueSet 1", "1.2.3");
this.tdb.FindOrCreateValueSetMember(this.vs1, snomed, "1", "One");
this.tdb.FindOrCreateValueSetMember(this.vs1, snomed, "2", "Two");
this.tdb.FindOrCreateValueSetMember(this.vs1, snomed, "3", "Three");
this.vs2 = this.tdb.FindOrCreateValueSet("ValueSet 2", "1.2.3.4");
this.tdb.FindOrCreateValueSetMember(this.vs2, snomed, "1", "One");
this.tdb.FindOrCreateValueSetMember(this.vs2, snomed, "2", "Two");
this.vs3 = this.tdb.FindOrCreateValueSet("ValueSet 3", "1.2.3.4.5");
this.vs3.IsIncomplete = true;
this.vs3.Source = "http://www.lantanagroup.com";
}
public void FindTemplate_Remote_Test()
{
HttpRequestMessage request = new HttpRequestMessage();
request.RequestUri = new Uri("http://test:100/");
MockObjectRepository repo = new MockObjectRepository();
repo.InitializeFHIR2Repository();
repo.InitializeLCG();
ResourceReference reference = new ResourceReference();
reference.Reference = "http://test.com/FHIR/StructureDefinition/test";
MockWebClient webClient = new MockWebClient();
var dafPatientJson = Trifolia.Test.Helper.GetSampleContents("Trifolia.Test.DocSamples.daf-patient_struc_def.json");
StructureDefinition strucDef = (StructureDefinition)FhirParser.ParseResourceFromJson(dafPatientJson);
webClient.ExpectContent("http://test.com/FHIR/StructureDefinition/test", dafPatientJson);
var foundTemplate = Shared.FindTemplate(request, webClient, repo, reference);
Assert.IsNotNull(foundTemplate);
Assert.AreEqual(1, foundTemplate.Id);
Assert.AreEqual(strucDef.Name, foundTemplate.Name);
}
public void Setup()
{
this.mockRepo = TestDataGenerator.GenerateMockDataset1();
IEnumerable <int> templateIds = (from t in this.mockRepo.Templates
select t.Id);
ImplementationGuideGenerator generator = new ImplementationGuideGenerator(this.mockRepo,
1, templateIds);
ExportSettings lSettings = new ExportSettings();
lSettings.Use(s =>
{
s.GenerateTemplateConstraintTable = true;
s.GenerateTemplateContextTable = true;
s.GenerateDocTemplateListTable = true;
s.GenerateDocContainmentTable = true;
s.AlphaHierarchicalOrder = false;
s.DefaultValueSetMaxMembers = 0;
s.GenerateValueSetAppendix = false;
s.IncludeXmlSamples = false;
s.IncludeChangeList = false;
s.IncludeTemplateStatus = true;
s.IncludeNotes = true;
});
generator.BuildImplementationGuide(lSettings);
this.docBytes = generator.GetDocument();
this.docContents = GetWordDocumentContents(docBytes);
this.doc = ReadWordDocXml(docContents, out this.nsMgr);
}
public void GetRecursiveTemplates_ThreeVersions_V3Changed()
{
MockObjectRepository tdb = new MockObjectRepository();
tdb.InitializeCDARepository();
// Version 1
var implementationGuide1 = tdb.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, "IG V1");
var template1 = tdb.GenerateTemplate("1.2.3.4", "Document", "Doc Template V1", implementationGuide1, "ClinicalDocument", "ClinicalDocument");
// Version 2
var implementationGuide2 = tdb.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, "IG V2", previousVersion: implementationGuide1);
// Version 3
var implementationGuide3 = tdb.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, "IG V3", previousVersion: implementationGuide2);
var template2 = tdb.GenerateTemplate("1.2.3.4", "Document", "Doc Template V3", implementationGuide3, "ClinicalDocument", "ClinicalDocument", previousVersion: template1);
// Check list of templates for version 1
var templates = implementationGuide1.GetRecursiveTemplates(tdb);
Assert.IsNotNull(templates, "Version 1 returned null value");
Assert.AreEqual(1, templates.Count, "Version 1 returned incorrect number of templates");
// Check list of templates for version 2
templates = implementationGuide2.GetRecursiveTemplates(tdb);
Assert.IsNotNull(templates, "Version 2 returned null value");
Assert.AreEqual(1, templates.Count, "Version 2 returned incorrect number of templates");
// Check list of templates for version 3
templates = implementationGuide3.GetRecursiveTemplates(tdb);
Assert.IsNotNull(templates, "Version 3 returned null value");
Assert.AreEqual(1, templates.Count, "Version 3 returned incorrect number of templates");
}
public static void Setup(TestContext context)
{
ExportTests.tdb = new MockObjectRepository();
TrifoliaImporter importer = new TrifoliaImporter(ExportTests.tdb);
ExportTests.tdb.InitializeFHIR3Repository();
ExportTests.tdb.InitializeLCGAndLogin();
string importContent = Helper.GetSampleContents(IMPORT_XML);
var importModel = ImportModel.Deserialize(importContent);
var importStatus = importer.Import(importModel);
Assert.IsTrue(importStatus.Success, "Expected import to succeed");
Assert.AreNotEqual(importStatus.ImplementationGuides.Count, 0, "Expected import to include implementation guides");
ImplementationGuide ig = ExportTests.tdb.ImplementationGuides.SingleOrDefault(y => y.Id == importStatus.ImplementationGuides.First().InternalId);
var schema = ig.ImplementationGuideType.GetSimpleSchema();
ImplementationGuideExporter exporter = new ImplementationGuideExporter(ExportTests.tdb, schema, "localhost", "http");
ExportTests.exportedBundle = exporter.GetImplementationGuides(implementationGuideId: ig.Id, include: "ImplementationGuide:resource");
ExportTests.exportedXml = FhirSerializer.SerializeResourceToXml(ExportTests.exportedBundle);
Assert.IsNotNull(ExportTests.exportedXml);
}
public void GetRecursiveTemplates_ContainedNotInferred_MultiVersions()
{
MockObjectRepository tdb = new MockObjectRepository();
tdb.InitializeCDARepository();
var externalIG = tdb.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, "External IG");
var exTemplate1 = tdb.GenerateTemplate("4.3.2.1", "Entry", "Ext Entry Template", externalIG, "observation", "Observation");
// Version 1, create the template
var implementationGuide1 = tdb.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, "IG V1");
var template1 = tdb.GenerateTemplate("1.2.3.4", "Document", "Doc Template V1", implementationGuide1, "ClinicalDocument", "ClinicalDocument");
var tc1 = tdb.GenerateConstraint(template1, null, null, "entryRelationship", "SHALL", "1..1");
tdb.GenerateConstraint(template1, tc1, exTemplate1, "observation", "SHALL", "1..1");
// Version 2, deprecate the template, remove contained external template
var implementationGuide2 = tdb.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, "IG V2", previousVersion: implementationGuide1);
var template2 = tdb.GenerateTemplate("1.2.3.4", "Document", "Doc Template V2", implementationGuide2, "ClinicalDocument", "ClinicalDocument", previousVersion: template1);
// Check list of templates for version 1
var templates = implementationGuide1.GetRecursiveTemplates(tdb, inferred: false);
Assert.IsNotNull(templates, "Version 1 returned null value");
Assert.AreEqual(1, templates.Count, "Version 1 returned incorrect number of templates");
// Check list of templates for version 2
templates = implementationGuide2.GetRecursiveTemplates(tdb, inferred: false);
Assert.IsNotNull(templates, "Version 2 returned null value");
Assert.AreEqual(1, templates.Count, "Version 2 returned incorrect number of templates");
}
public void ExportTemplatesModelTest1()
{
MockObjectRepository tdb = new MockObjectRepository();
tdb.InitializeCDARepository();
Organization org = tdb.FindOrAddOrganization("LCG Test");
ImplementationGuide ig = tdb.FindOrAddImplementationGuide(tdb.FindImplementationGuideType(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME), "Test Implementation Guide");
IGSettingsManager igSettings = new IGSettingsManager(tdb, ig.Id);
Template template = tdb.GenerateTemplate("1.2.3.4", "Document", "Test Template", ig, "observation", "Observation", "Test Description", "Test Notes", org);
var tc1 = tdb.GenerateConstraint(template, null, null, "entryRelationship", "SHALL", "1..1");
var tc2 = tdb.GenerateConstraint(template, tc1, null, "observation", "SHOULD", "0..1");
var tc3 = tdb.GenerateConstraint(template, tc2, null, "value", "SHALL", "1..1", "CD", value: "4321", displayName: "Test");
tc3.Description = "Test description";
tc3.Label = "Test Label";
var tc4 = tdb.GeneratePrimitive(template, null, "SHALL", "This is a test");
ExportTemplate export = template.Export(tdb, igSettings);
Assert.IsNotNull(export);
Assert.AreEqual(template.Oid, export.identifier);
Assert.AreEqual(template.Name, export.title);
Assert.AreEqual(template.TemplateType.Name, export.templateType);
Assert.AreEqual(template.PrimaryContext, export.context);
Assert.AreEqual(template.PrimaryContextType, export.contextType);
Assert.AreEqual(template.Description, export.Description);
Assert.AreEqual(template.Notes, export.Notes);
Assert.AreEqual(template.OrganizationName, export.organizationName);
// Assert constraints
Assert.IsNotNull(export.Constraint);
Assert.AreEqual(2, export.Constraint.Count);
// tc1
Assert.AreEqual(tc1.Context, export.Constraint[0].context);
Assert.AreEqual(ExportConformanceTypes.SHALL, export.Constraint[0].conformance);
Assert.AreEqual(tc1.Cardinality, export.Constraint[0].cardinality);
// tc4
Assert.IsNull(export.Constraint[1].context);
Assert.AreEqual(true, export.Constraint[1].isPrimitive);
Assert.AreEqual(tc4.PrimitiveText, export.Constraint[1].NarrativeText);
// tc2
Assert.AreEqual(1, export.Constraint[0].Constraint.Count);
Assert.AreEqual(tc2.Context, export.Constraint[0].Constraint[0].context);
Assert.AreEqual(ExportConformanceTypes.SHOULD, export.Constraint[0].Constraint[0].conformance);
Assert.AreEqual(tc2.Cardinality, export.Constraint[0].Constraint[0].cardinality);
// tc3
Assert.AreEqual(1, export.Constraint[0].Constraint[0].Constraint.Count);
Assert.AreEqual(tc3.Context, export.Constraint[0].Constraint[0].Constraint[0].context);
Assert.AreEqual(ExportConformanceTypes.SHALL, export.Constraint[0].Constraint[0].Constraint[0].conformance);
Assert.AreEqual(tc3.Cardinality, export.Constraint[0].Constraint[0].Constraint[0].cardinality);
Assert.AreEqual(tc3.Description, export.Constraint[0].Constraint[0].Constraint[0].Description);
Assert.AreEqual(tc3.Label, export.Constraint[0].Constraint[0].Constraint[0].Label);
Assert.IsFalse(string.IsNullOrEmpty(export.Constraint[0].Constraint[0].Constraint[0].Description));
}
public void ExportTemplatesModelTest2()
{
MockObjectRepository tdb = new MockObjectRepository();
tdb.InitializeCDARepository();
Organization org = tdb.FindOrAddOrganization("LCG Test");
ImplementationGuide ig = tdb.FindOrAddImplementationGuide(tdb.FindImplementationGuideType(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME), "Test Implementation Guide");
IGSettingsManager igSettings = new IGSettingsManager(tdb, ig.Id);
Template template = tdb.GenerateTemplate("1.2.3.4", "Document", "Test Template", ig, "observation", "Observation", "Test Description", "Test Notes");
ExportTemplate export = template.Export(tdb, igSettings);
Assert.IsNotNull(export);
Assert.AreEqual(template.Oid, export.identifier);
Assert.AreEqual(template.Name, export.title);
Assert.AreEqual(template.TemplateType.Name, export.templateType);
Assert.AreEqual(template.PrimaryContext, export.context);
Assert.AreEqual(template.PrimaryContextType, export.contextType);
Assert.AreEqual(template.Description, export.Description);
Assert.AreEqual(template.Notes, export.Notes);
Assert.IsNull(export.organizationName);
Assert.AreEqual(template.OwningImplementationGuide.Name, export.ImplementationGuide.name);
}
public void CloneTemplateTest()
{
MockObjectRepository repo = TestDataGenerator.GenerateMockDataset1();
var user = repo.FindOrAddUser("test.user", repo.FindOrAddOrganization("LCG"));
Template firstTemplate = repo.Templates.First();
Template secondTemplate = firstTemplate.CloneTemplate(repo, user.Id);
repo.Templates.AddObject(secondTemplate);
Assert.AreNotEqual(firstTemplate.Name, secondTemplate.Name, "Title for the first template should be different than the cloned template.");
Assert.AreEqual(firstTemplate.Oid + ".1", secondTemplate.Oid, "Expected the second template's oid to have .1 added to it.");
// Test that other properties were copied
Assert.AreEqual(firstTemplate.ImplementationGuideTypeId, secondTemplate.ImplementationGuideTypeId);
Assert.AreEqual(firstTemplate.TemplateTypeId, secondTemplate.TemplateTypeId);
Assert.AreEqual(firstTemplate.OwningImplementationGuideId, secondTemplate.OwningImplementationGuideId);
Assert.AreEqual(firstTemplate.ImpliedTemplateId, secondTemplate.ImpliedTemplateId);
Assert.AreEqual(firstTemplate.PrimaryContext, secondTemplate.PrimaryContext);
Assert.AreEqual(firstTemplate.PrimaryContextType, secondTemplate.PrimaryContextType);
Assert.AreEqual(firstTemplate.IsOpen, secondTemplate.IsOpen);
// Test that making more than 10 copies properly generates the title and oid
Template lastCopiedTemplate = null;
int count = 1;
while (count < 11)
{
lastCopiedTemplate = firstTemplate.CloneTemplate(repo, user.Id);
repo.Templates.AddObject(lastCopiedTemplate);
count++;
}
Assert.AreEqual(firstTemplate.Oid + ".12", lastCopiedTemplate.Oid, "Generated oid for copied templates is not working when there are more than 10 copies.");
Assert.AreEqual(firstTemplate.Name + " (Copy 11)", lastCopiedTemplate.Name, "Genrated title for copied templates is not working when there are more than 10 copies.");
}
public void TestSetup()
{
this.tdb = new MockObjectRepository();
this.tdb.InitializeCDARepository();
CodeSystem cs = tdb.FindOrCreateCodeSystem("LOINC", "1.2.3.4.5");
this.vs1 = tdb.FindOrCreateValueSet("Test Valueset 1", "1.2.3.4");
this.tdb.FindOrCreateValueSetMember(this.vs1, cs, "1", "One", "active", "1/1/2000");
this.tdb.FindOrCreateValueSetMember(this.vs1, cs, "2", "Two", "active", "1/1/2000");
this.tdb.FindOrCreateValueSetMember(this.vs1, cs, "1", "One", "inactive", "1/1/2001");
this.tdb.FindOrCreateValueSetMember(this.vs1, cs, "3", "Three", "active", "1/1/2001");
this.tdb.FindOrCreateValueSetMember(this.vs1, cs, "1", "One", "active", "1/1/2002");
this.vs2 = tdb.FindOrCreateValueSet("Test Valueset 2", "4.3.2.1");
this.tdb.FindOrCreateValueSetMember(this.vs2, cs, "1", "One");
this.tdb.FindOrCreateValueSetMember(this.vs2, cs, "2", "Two");
this.tdb.FindOrCreateValueSetMember(this.vs2, cs, "3", "Three", "inactive", "1/1/2000");
this.tdb.FindOrCreateValueSetMember(this.vs2, cs, "4", "Four", "active", "1/1/2000");
this.vs3 = tdb.FindOrCreateValueSet("Test Valueset 3", "1.4.2.3");
this.tdb.FindOrCreateValueSetMember(this.vs3, cs, "1", "One");
this.tdb.FindOrCreateValueSetMember(this.vs3, cs, "2", "Two");
this.tdb.FindOrCreateValueSetMember(this.vs3, cs, "3", "Three", valueSetStatus: "inactive", dateOfValueSetStatus: "08/05/2013");
this.tdb.FindOrCreateValueSetMember(this.vs3, cs, "4", "Four", valueSetStatus: "active");
this.tdb.FindOrCreateValueSetMember(this.vs3, cs, "5", "Five");
this.ig = this.tdb.FindOrCreateImplementationGuide(Constants.IGTypeNames.CDA, "Test IG");
}
public void TestGetTemplates()
{
MockObjectRepository mockRepo = new MockObjectRepository();
mockRepo.InitializeFHIR3Repository();
mockRepo.InitializeLCGAndLogin();
var ig = mockRepo.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_FHIR_STU3_IG_TYPE_NAME, "Test IG");
var template = mockRepo.GenerateTemplate("http://test.com/profile1", "Composition", "Test Composition", ig);
HttpRequestMessage request = new HttpRequestMessage()
{
RequestUri = new Uri("http://localhost:8080/api/FHIR3/StructureDefinition")
};
HttpRequest contextRequest = new HttpRequest(null, "http://localhost:8080/api/FHIR3/StructureDefinition", null);
HttpResponse contextResponse = new HttpResponse(new StringWriter());
HttpContext.Current = new HttpContext(contextRequest, contextResponse);
FHIR3StructureDefinitionController controller = new FHIR3StructureDefinitionController(mockRepo, request);
var response = controller.GetTemplates();
var result = AssertHelper.IsType <NegotiatedContentResult <Bundle> >(response);
Assert.IsNotNull(result.Content);
Assert.AreEqual(1, result.Content.Entry.Count);
var firstEntry = result.Content.Entry.First();
Assert.AreEqual("http://localhost:8080/api/FHIR3/StructureDefinition/1", firstEntry.FullUrl);
Assert.IsNotNull(firstEntry.Resource);
var firstStrucDef = AssertHelper.IsType <StructureDefinition>(firstEntry.Resource);
Assert.AreEqual("Test-Composition", firstStrucDef.Id);
}
/// <summary>
///A test for BuildTransform
///</summary>
//[TestMethod()]
public void BuildGreenTransformTest()
{
MockObjectRepository mockRepo = TestDataGenerator.GenerateGreenMockDataset1();
int templateId = 1;
Dictionary <int, int> greenTemplates = new Dictionary <int, int>();
greenTemplates.Add(templateId, 1);
GreenTransformGenerator target = new GreenTransformGenerator(mockRepo, greenTemplates, templateId);
target.BuildTransform();
string transformXml = target.GetTransform();
XmlDocument doc = new XmlDocument();
doc.LoadXml(transformXml);
XmlNamespaceManager nsManager = new XmlNamespaceManager(doc.NameTable);
nsManager.AddNamespace("xsl", "http://www.w3.org/1999/XSL/Transform");
nsManager.AddNamespace("ig", "urn:hl7-org:v3");
XmlElement testGreenTemplate1 = doc.SelectSingleNode("/xsl:stylesheet/xsl:template[@name='TestGreenTemplate1']", nsManager) as XmlElement;
Assert.IsNotNull(testGreenTemplate1);
XmlTestHelper.AssertXmlSingleNode(testGreenTemplate1, nsManager, "ig:ClinicalDocument", "Expected to find a root clinical document node");
XmlTestHelper.AssertXmlSingleNode(testGreenTemplate1, nsManager, "ig:ClinicalDocument/ig:templateId[@root='1.2.3.4']", "Expected to find a templateId");
XmlTestHelper.AssertXmlSingleNode(testGreenTemplate1, nsManager, "ig:ClinicalDocument/xsl:element[@name='setId'][xsl:call-template[@name='dataType_II' and xsl:with-param[@name='instance' and @select='VersionSet']]]",
"Expected to find xsl:element for setId");
}
public void TestSuccessfulCreate()
{
MockObjectRepository mockRepo = new MockObjectRepository();
mockRepo.InitializeFHIR3Repository();
mockRepo.InitializeLCG();
var strucDefJson = Helper.GetSampleContents("Trifolia.Test.DocSamples.FHIR.STU3.cqif-questionnaire-strucdef.json");
StructureDefinition strucDef = (StructureDefinition)FhirParser.ParseResourceFromJson(strucDefJson);
HttpRequestMessage request = new HttpRequestMessage();
request.RequestUri = new Uri("http://localhost:8080/api/FHIR3/StructureDefinition");
HttpRequest contextRequest = new HttpRequest(null, "http://localhost:8080/api/FHIR3/StructureDefinition", null);
HttpResponse contextResponse = new HttpResponse(new StringWriter());
HttpContext.Current = new HttpContext(contextRequest, contextResponse);
FHIR3StructureDefinitionController controller = new FHIR3StructureDefinitionController(mockRepo, request);
var response = controller.CreateStructureDefinition(strucDef);
var result = AssertHelper.IsType <TrifoliaApiController.CustomHeadersWithContentResult <StructureDefinition> >(response);
Assert.AreEqual(HttpStatusCode.Created, result.StatusCode);
Assert.IsNotNull(result.CustomHeaders["Location"]);
Assert.AreEqual(result.CustomHeaders["Location"], "http://localhost:8080/api/FHIR3/StructureDefinition/1");
Assert.IsNotNull(result.Content);
Assert.AreEqual(strucDef.Name, result.Content.Name);
}
public void TestFailedCreate_Id()
{
MockObjectRepository mockRepo = new MockObjectRepository();
mockRepo.InitializeFHIR3Repository();
mockRepo.InitializeLCG();
var strucDefJson = Helper.GetSampleContents("Trifolia.Test.DocSamples.FHIR.STU3.cqif-questionnaire-strucdef.json");
StructureDefinition strucDef = (StructureDefinition)FhirParser.ParseResourceFromJson(strucDefJson);
strucDef.Id = "cqif-questionnaire";
HttpRequestMessage request = new HttpRequestMessage();
request.RequestUri = new Uri("http://localhost:8080/api/FHIR3/StructureDefinition");
HttpRequest contextRequest = new HttpRequest(null, "http://localhost:8080/api/FHIR3/StructureDefinition", null);
HttpResponse contextResponse = new HttpResponse(new StringWriter());
HttpContext.Current = new HttpContext(contextRequest, contextResponse);
FHIR3StructureDefinitionController controller = new FHIR3StructureDefinitionController(mockRepo, request);
var response = controller.CreateStructureDefinition(strucDef);
var result = AssertHelper.IsType <NegotiatedContentResult <OperationOutcome> >(response);
Assert.AreEqual(HttpStatusCode.BadRequest, result.StatusCode);
Assert.IsNotNull(result.Content);
Assert.AreEqual(1, result.Content.Issue.Count);
}
public void TestBuildContextStringForAddress_ContainedByMultiple()
{
MockObjectRepository tdb = new MockObjectRepository();
tdb.InitializeCDARepository();
var igType = tdb.FindImplementationGuideType(Constants.IGTypeNames.CDA);
var unspecifiedTemplateType = tdb.FindOrCreateTemplateType(igType, MockObjectRepository.DEFAULT_CDA_UNSPECIFIED_TYPE);
var docTemplateType = tdb.FindOrCreateTemplateType(igType, Constants.IGTypeNames.CDA);
var entryTemplateType = tdb.FindOrCreateTemplateType(igType, MockObjectRepository.DEFAULT_CDA_ENTRY_TYPE);
var ig = tdb.FindOrCreateImplementationGuide(igType, "Test IG");
TemplateContextBuilder tcb = new TemplateContextBuilder(tdb, igType, igType.GetSimpleSchema());
Template addrTemplate = tdb.CreateTemplate("urn:oid:1.2.3.4", unspecifiedTemplateType, "Test Address Template", ig, "addr", "AD");
Template containingTemplate1 = tdb.CreateTemplate("urn:oid:4.3.2.1", docTemplateType, "Test Doc Template", ig, "ClinicalDocument", "ClinicalDocument");
var c1_1 = tdb.AddConstraintToTemplate(containingTemplate1, null, null, "recordTarget", "SHALL", "1..1");
var c1_2 = tdb.AddConstraintToTemplate(containingTemplate1, c1_1, null, "patientRole", "SHALL", "1..1");
tdb.AddConstraintToTemplate(containingTemplate1, c1_2, addrTemplate, "addr", "SHALL", "1..1");
Template containingTemplate2 = tdb.CreateTemplate("urn:oid:3.2.1.4", entryTemplateType, "Test Entry Template", ig, "observation", "Observation");
var c2_1 = tdb.AddConstraintToTemplate(containingTemplate2, null, null, "participant", "SHALL", "1..1");
var c2_2 = tdb.AddConstraintToTemplate(containingTemplate2, c2_1, null, "participantRole", "SHALL", "1..1");
tdb.AddConstraintToTemplate(containingTemplate2, c2_2, addrTemplate, "addr", "SHALL", "1..1");
var contextString = tcb.BuildContextString(addrTemplate);
Assert.AreEqual("cda:ClinicalDocument[cda:templateId[@root='4.3.2.1']]/cda:recordTarget/cda:patientRole/cda:addr | cda:observation[cda:templateId[@root='3.2.1.4']]/cda:participant/cda:participantRole/cda:addr", contextString);
}
public void ExportTrifoliaTest()
{
MockObjectRepository mockRepo = TestDataGenerator.GenerateMockDataset2();
int implementationGuideId = 1;
TrifoliaExport target = new TrifoliaExport(mockRepo, implementationGuideId);
target.BuildExport();
string expected = string.Empty;
string actual = target.GetExport();
bool foundContext = actual.Contains("INSERT INTO `dictionarycontext` (`ID`, `context`, `lastUpdate`) VALUES (1, 'value',");
bool foundCodeSystem = actual.Contains("INSERT INTO `dictionarycontext` (`ID`, `OID`, `codeSystemName`, `description`, `lastUpdate`) VALUES (1, '6.96', 'SNOMED CT',");
bool foundValueSet = actual.Contains("INSERT INTO `valueset` (`ID`, `OID`, `valueSetName`, `valueSetCode`, `description`, `intensional`, `intensionalDefinition`, `lastUpdate`) VALUES (1, '11.1', 'GenderCode', ");
bool foundValueSetMember = actual.Contains("INSERT INTO `valuesetmember` (`ID`, `valueSetId`, `valueSetOId`, `codeSystemId`, `code`, `codeSystemOID`, `displayName`, `dateOfValueSetStatus`, `lastUpdate`) VALUES (3, 1, '11.1', '3', 'U', '1.2.3', 'Undetermined', '1/2/2012 12:00:00 AM',");
bool foundConformance = actual.Contains("INSERT INTO `conformance_type` (`id`, `conftype`, `lastUpdate`) VALUES (1, 'SHALL',");
bool foundTemplateType = actual.Contains("INSERT INTO `template_type` (`id`, `templatetype`, `lastUpdate`) VALUES (1, 'Document',");
bool foundImplementationGuide = actual.Contains("INSERT INTO `implementationguide` (`id`, `title`, `lastUpdate`) VALUES (1, 'The IG',");
bool foundUser = actual.Contains("INSERT INTO `tdb_users` (id, user_name, user_password) VALUES (1,'defaultUser','ž·Ó');");
bool foundTemplate = actual.Contains("INSERT INTO `template` (`ID`, `OID`, `isOpen`, `title`, `templatetype`, `description`, `keywords`, `primaryContext`, `impliedTemplate`, `notes`, `lastUpdate`, `uname`) VALUES (1, '1.2.3.4.5.6', 0, 'Test Template 1', 1, 'Test Description 1', NULL, NULL, NULL, 'Test Notes 1',");
bool foundConstraint = actual.Contains("INSERT INTO `template_constraint` (`ID`, `parentConstraintID`, `templateID`, `order`, `isBranch`, `businessConformance`, `cardinality`, `context`, `containedTemplate`, `isPrimitive`, `constraintNarrative`, `valueConformance`, `staticDynamic`, `valueSetOID`, `version`, `codeOrValue`, `codeSystemOID`, `displayName`, `datatype`, `schematronTest`, `lastUpdate`, `uname`) VALUES (1, NULL, 1, 0, 0, 1, '1..1', 1, NULL, 0, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL,");
bool foundIGTemplateAssociation = actual.Contains("INSERT INTO `associationtemplateimplementationguide` (`ID`, `templateId`, `implementationGuideId`, `lastUpdate`) VALUES (1, 1, 1,");
Assert.IsTrue(foundContext, "Expected to find an insert statement for context 'statusCode'");
Assert.IsTrue(foundCodeSystem, "Expected to find an insert statement for 'SNOMED CT (6.96)'");
Assert.IsTrue(foundValueSet, "Expected to find an insert statement for valueset '11.1'");
Assert.IsTrue(foundValueSetMember, "Expected to find an insert statement for valueset member '3'");
Assert.IsTrue(foundConformance, "Expected to find an insert statement for conformance 'SHALL'");
Assert.IsTrue(foundTemplateType, "Expected to find an insert statement for template type 'Document'");
Assert.IsTrue(foundImplementationGuide, "Expected to find an insert statement for implementation guide 'The IG'");
Assert.IsTrue(foundUser, "Expected to find an insert statement for user 'defaultUser'");
Assert.IsTrue(foundTemplate, "Expected to find an insert statement for template 'Test Template 1'");
Assert.IsTrue(foundIGTemplateAssociation, "Expected to find an insert statement associating ig 'The IG' to template 'Test Template 1'");
}
public void TestParseColumnsHeaders()
{
MockObjectRepository repo = new MockObjectRepository();
BulkCopyController controller = new BulkCopyController(repo);
ExcelUpload uploadModel = new ExcelUpload()
{
ExcelFile = this.exampleContent,
FirstRowIsHeader = true
};
List <ExcelSheet> sheets = controller.Parse(uploadModel);
Assert.IsNotNull(sheets);
Assert.AreEqual(2, sheets.Count);
var firstSheet = sheets[0];
var secondSheet = sheets[1];
Assert.IsNotNull(firstSheet.Columns);
Assert.AreEqual(4, firstSheet.Columns.Count);
Assert.AreEqual("A", firstSheet.Columns[0].Letter);
Assert.AreEqual("Name", firstSheet.Columns[0].Name);
Assert.AreEqual("B", firstSheet.Columns[1].Letter);
Assert.AreEqual("OID", firstSheet.Columns[1].Name);
Assert.IsNotNull(secondSheet.Columns);
Assert.AreEqual(15, secondSheet.Columns.Count);
Assert.AreEqual("A", secondSheet.Columns[0].Letter);
Assert.AreEqual("Template", secondSheet.Columns[0].Name);
Assert.AreEqual("B", secondSheet.Columns[1].Letter);
Assert.AreEqual("Number", secondSheet.Columns[1].Name);
}
public void Setup()
{
this.tdb = new MockObjectRepository();
this.tdb.InitializeCDARepository();
this.igType = this.tdb.FindImplementationGuideType(Constants.IGTypeNames.CDA);
this.igTypeSchema = this.igType.GetSimpleSchema();
}
public void Setup()
{
this.tdb = new MockObjectRepository();
this.tdb.InitializeFHIRRepository();
this.tdb.InitializeLCGAndLogin();
this.ig = this.tdb.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_FHIR_DSTU1_IG_TYPE_NAME, "Test IG");
}
public void Setup()
{
this.mockRepo = new MockObjectRepository();
cdaType = this.mockRepo.FindOrCreateImplementationGuideType(Constants.IGTypeNames.CDA, string.Empty, string.Empty, string.Empty);
documentType = this.mockRepo.FindOrCreateTemplateType(cdaType, "Document Templates", "ClinicalDocument", "ClinicalDocument", 1);
ig = this.mockRepo.FindOrCreateImplementationGuide(cdaType, "Test");
}
public void Setup()
{
this.mockRepo = new MockObjectRepository();
cdaType = this.mockRepo.FindOrCreateImplementationGuideType(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, string.Empty, string.Empty, string.Empty);
documentType = this.mockRepo.FindOrCreateTemplateType(cdaType, "Document Templates", "ClinicalDocument", "ClinicalDocument", 1);
ig = this.mockRepo.FindOrAddImplementationGuide(cdaType, "Test");
}
public void ExportTemplatesTest()
{
MockObjectRepository tdb = TestDataGenerator.GenerateMockDataset1();
List <Template> templates = tdb.Templates.ToList();
IGSettingsManager igSettings = new IGSettingsManager(tdb);
TemplateExporter exporter = new TemplateExporter(tdb, templates, igSettings);
string actual = exporter.GenerateXMLExport();
Assert.IsNotNull(actual, "Export should have produced content.");
Assert.AreNotEqual(string.Empty, actual, "Export should have produced content.");
XmlDocument exportDoc = new XmlDocument();
exportDoc.LoadXml(actual);
XmlNamespaceManager nsManager = new XmlNamespaceManager(exportDoc.NameTable);
nsManager.AddNamespace("lcg", "http://www.lantanagroup.com");
XmlNodeList templateNodes = exportDoc.DocumentElement.SelectNodes("lcg:Template", nsManager);
Assert.IsNotNull(templateNodes, "Did not find any templates in export.");
Assert.AreEqual(4, templateNodes.Count, "Export should have produced three (4) Template elements.");
XmlAttribute identifierAttribute = templateNodes[0].Attributes["identifier"];
XmlAttribute implementationGuideTypeAttribute = templateNodes[0].Attributes["implementationGuideType"];
XmlAttribute templateTypeAttribute = templateNodes[0].Attributes["templateType"];
XmlAttribute titleAttribute = templateNodes[0].Attributes["title"];
XmlAttribute bookmarkAttribute = templateNodes[0].Attributes["bookmark"];
Assert.IsNotNull(identifierAttribute, "Couldn't find identifier attribute on Template.");
Assert.AreEqual("1.2.3.4.5", identifierAttribute.Value, "Template's identifier has an incorrect value.");
Assert.IsNotNull(implementationGuideTypeAttribute, "Couldn't find implementationGuideType attribute on Template.");
Assert.AreEqual(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, implementationGuideTypeAttribute.Value, "Template's implementationGuideType has an incorrect value.");
Assert.IsNotNull(templateTypeAttribute, "Couldn't find templateType attribute on Template.");
Assert.AreEqual("Document", templateTypeAttribute.Value, "Template's templateType has an incorrect value.");
Assert.IsNotNull(titleAttribute, "Couldn't find title attribute on Template.");
Assert.AreEqual("Test Template 1", titleAttribute.Value, "Template's title has an incorrect value.");
Assert.IsNotNull(bookmarkAttribute, "Couldn't find bookmark attribute on Template.");
Assert.AreEqual("D_Test_Template_1", bookmarkAttribute.Value, "Template's bookmark has an incorrect value.");
XmlNodeList constraintNodes = templateNodes[0].SelectNodes("lcg:Constraint", nsManager);
Assert.IsNotNull(constraintNodes, "Did not find any constraints in the first template.");
Assert.AreEqual(3, constraintNodes.Count, "Did not find the correct number of root-level constraints in the first exported template.");
XmlNodeList childConstraintNodes = constraintNodes[1].SelectNodes("lcg:Constraint", nsManager);
Assert.IsNotNull(childConstraintNodes, "Did not find any grand-child constraints in the first template.");
Assert.AreEqual(1, childConstraintNodes.Count, "Did not find the correct number of grand-child constraints in the first exported template.");
}
public void MyTestInitialize()
{
this.mockRepo = TestDataGenerator.GenerateMockDataset2();
ImplementationGuide ig = this.mockRepo.ImplementationGuides.SingleOrDefault(y => y.Name == TestDataGenerator.DS2_IG_NAME);
this.igSettings = new IGSettingsManager(this.mockRepo, ig.Id);
this.igTypePlugin = ig.ImplementationGuideType.GetPlugin();
this.linkContainedTemplate = false;
}
public static void Initialize(TestContext context)
{
tdb = new MockObjectRepository();
using (MemoryStream ms = new MemoryStream())
{
doc = WordprocessingDocument.Create(ms, WordprocessingDocumentType.Document);
mdp = doc.AddMainDocumentPart();
}
}
/// <summary>
/// Used to test green artifact generation.
/// </summary>
/// <returns></returns>
public static MockObjectRepository GenerateGreenMockDataset1()
{
MockObjectRepository mockRepo = new MockObjectRepository();
mockRepo.FindOrCreateCodeSystem("SNOMED CT", "6.96");
mockRepo.FindOrCreateCodeSystem("HL7ActStatus", "113883.5.14");
mockRepo.FindOrCreateValueSet("GenderCode", "11.1");
ImplementationGuideType igType = mockRepo.FindOrCreateImplementationGuideType("CDA", "CDA.xsd", "cda", "urn:hl7-org:v3");
TemplateType docType = mockRepo.FindOrCreateTemplateType(igType, "Document", "ClinicalDocument", "ClinicalDocument", 1);
TemplateType sectionType = mockRepo.FindOrCreateTemplateType(igType, "Section", "section", "Section", 2);
mockRepo.GenerateDataType(igType, "II");
mockRepo.GenerateDataType(igType, "INT");
mockRepo.GenerateDataType(igType, "TS");
mockRepo.GenerateDataType(igType, "CE");
ImplementationGuide ig1 = mockRepo.FindOrAddImplementationGuide(igType, "Test IG 1");
Template t1 = mockRepo.GenerateTemplate("urn:oid:1.2.3.4", docType, "Test Template 1", ig1, null, null, null);
TemplateConstraint tc1 = mockRepo.GenerateConstraint(t1, null, null, "code", "SHALL", "1..1", "CE");
TemplateConstraint tc1_1 = mockRepo.GenerateConstraint(t1, tc1, null, "@code", "SHALL", "1..1", null, "SHALL", "1234-x", "Test Doc Code", null, null);
TemplateConstraint tc1_2 = mockRepo.GenerateConstraint(t1, tc1, null, "@codeSystem", "SHALL", "1..1", null, "SHALL", "1.5.4.2.3", "Test Code System OID", null, null);
TemplateConstraint tc2 = mockRepo.GenerateConstraint(t1, null, null, "setId", "SHALL", "1..1", "II");
TemplateConstraint tc3 = mockRepo.GenerateConstraint(t1, null, null, "versionNumber", "SHALL", "1..1", "INT");
TemplateConstraint tc4 = mockRepo.GenerateConstraint(t1, null, null, "recordTarget", "SHALL", "1..*", null);
TemplateConstraint tc4_1 = mockRepo.GenerateConstraint(t1, tc4, null, "patientRole", "SHALL", "1..1", null);
TemplateConstraint tc4_1_1 = mockRepo.GenerateConstraint(t1, tc4_1, null, "id", "SHALL", "1..1", "II");
TemplateConstraint tc4_1_2 = mockRepo.GenerateConstraint(t1, tc4_1, null, "patient", "SHALL", "1..1", null);
TemplateConstraint tc4_1_2_1 = mockRepo.GenerateConstraint(t1, tc4_1_2, null, "birthTime", "SHALL", "1..1", "TS");
TemplateConstraint tc4_1_2_2 = mockRepo.GenerateConstraint(t1, tc4_1_2, null, "administrativeGenderCode", "SHALL", "1..1", "CE");
// Green Info
GreenTemplate gt1 = new GreenTemplate()
{
Id = 1,
Template = t1,
TemplateId = t1.Id,
Name = "Test Green Template 1"
};
mockRepo.GreenTemplates.AddObject(gt1);
t1.GreenTemplates.Add(gt1);
GreenConstraint gc1 = mockRepo.GenerateGreenConstraint(gt1, tc2, null, 1, "VersionSet", true);
GreenConstraint gc2 = mockRepo.GenerateGreenConstraint(gt1, tc3, null, 2, "VersionNumber", true);
GreenConstraint gc3 = mockRepo.GenerateGreenConstraint(gt1, tc4, null, 3, "Patient", false);
GreenConstraint gc4 = mockRepo.GenerateGreenConstraint(gt1, tc4_1_1, gc3, 1, "Id", true);
GreenConstraint gc5 = mockRepo.GenerateGreenConstraint(gt1, tc4_1_2_1, gc3, 2, "BirthDate", true);
GreenConstraint gc6 = mockRepo.GenerateGreenConstraint(gt1, tc4_1_2_2, gc3, 3, "Gender", true);
return(mockRepo);
}
public void BuildNormativeTransformTest()
{
MockObjectRepository mockRepo = TestDataGeneration.GenerateMockDataset1();
long implementationGuideId = 1;
NormativeTransformGenerator target = new NormativeTransformGenerator(mockRepo, implementationGuideId);
target.BuildTransform();
string transform = target.GetTransform();
Console.WriteLine(transform);
}
public void Setup()
{
this.tdb = new MockObjectRepository();
this.tdb.InitializeCDARepository();
this.tdb.InitializeFHIR3Repository();
var fhirIgType = this.tdb.FindImplementationGuideType(Constants.IGTypeNames.FHIR_STU3);
this.fhirIg = this.tdb.FindOrCreateImplementationGuide(fhirIgType, "Test FHIR IG");
this.fhirIgSettings = new IGSettingsManager(this.tdb, this.fhirIg.Id);
this.fhirIgTypePlugin = fhirIgType.GetPlugin();
}
public void Setup()
{
this.mockRepo = new MockObjectRepository();
this.mockRepo.InitializeCDARepository();
this.mockRepo.FindOrAddImplementationGuide(MockObjectRepository.DEFAULT_CDA_IG_TYPE_NAME, "Dev Test IG");
string importXml = Helper.GetSampleContents("Trifolia.Test.DocSamples.sample2.xml");
TemplateImporter importer = new TemplateImporter(this.mockRepo);
var templates = importer.Import(importXml);
Assert.AreEqual(0, importer.Errors.Count, "Expected 0 errors from importing sample2.xml");
Assert.AreEqual(5, templates.Count, "Expected 5 templates to be imported from sample2.xml");
}