public void TryMatch(string potentialMatch, bool overwrite)
{
if (string.IsNullOrEmpty(potentialMatch))
{
return;
}
foreach (var spectrumSourceFile in SpectrumSourceFiles.Keys)
{
if (spectrumSourceFile == null || (!overwrite && SpectrumSourceFiles[spectrumSourceFile].HasMatches))
{
continue;
}
if (Path.GetFileName(spectrumSourceFile).Equals(Path.GetFileName(potentialMatch)))
{
if (overwrite || !SpectrumSourceFiles[spectrumSourceFile].HasExactMatch)
{
SpectrumSourceFiles[spectrumSourceFile].ExactMatch = potentialMatch;
}
}
else if (MeasuredResults.IsBaseNameMatch(Path.GetFileNameWithoutExtension(spectrumSourceFile),
Path.GetFileNameWithoutExtension(potentialMatch)) &&
(overwrite || !SpectrumSourceFiles[spectrumSourceFile].HasAlternateMatch))
{
SpectrumSourceFiles[spectrumSourceFile].AlternateMatch = potentialMatch;
}
}
}
private void RemoveCorrespondingLibraryRunsForReplicates()
{
if (listLibraries.Items.Count != 0)
{
foreach (var chrom in ChromatogramsRemovedList)
{
foreach (var chromFileInfo in chrom.MSDataFileInfos)
{
foreach (var documentLibrary in DocumentLibraries)
{
foreach (var dataFile in documentLibrary.LibraryFiles.FilePaths)
{
if (MeasuredResults.IsBaseNameMatch(chromFileInfo.FilePath.GetFileNameWithoutExtension(),
Path.GetFileNameWithoutExtension(dataFile)))
{
int foundIndex = listLibraries.FindString(dataFile);
if (ListBox.NoMatches != foundIndex)
{
LibraryRunsRemovedList.Add(dataFile);
listLibraries.Items.RemoveAt(foundIndex);
if (listLibraries.Items.Count == 0)
{
return;
}
}
}
}
}
}
}
}
}
public void TestBaseNameMatch()
{
Assert.IsTrue(MeasuredResults.IsBaseNameMatch("BaseName123", "BaseName123.wiff"));
Assert.IsTrue(MeasuredResults.IsBaseNameMatch("BaseName123.c", "BaseName123"));
Assert.IsTrue(MeasuredResults.IsBaseNameMatch("BaseName123.c", "BASENAME123"));
Assert.IsTrue(MeasuredResults.IsBaseNameMatch("BASENAME123", "basename123"));
Assert.IsFalse(MeasuredResults.IsBaseNameMatch("BaseName123", "BaseName123-wiff"));
Assert.IsFalse(MeasuredResults.IsBaseNameMatch("BaseName123", "BaseName123_wiff"));
Assert.IsFalse(MeasuredResults.IsBaseNameMatch("BaseName123", "BaseName1234"));
Assert.IsFalse(MeasuredResults.IsBaseNameMatch("BaseName1234", "BaseName123"));
}
private void TestRemoveOneReplicateAndCorrespondingLibraryRuns()
{
var chromatograms = SkylineWindow.Document.Settings.MeasuredResults.Chromatograms;
var chromToRemove = chromatograms[0];
List <string> dataFilesToRemove = new List <string>();
foreach (var chromFileInfo in chromToRemove.MSDataFileInfos)
{
foreach (var dataFile in DocumentLibrary.LibraryFiles.FilePaths)
{
if (MeasuredResults.IsBaseNameMatch(chromFileInfo.FilePath.GetFileNameWithoutExtension(),
Path.GetFileNameWithoutExtension(dataFile)))
{
dataFilesToRemove.Add(dataFile);
}
}
}
using (new WaitDocumentChange(null, true))
{
RunDlg <ManageResultsDlg>(SkylineWindow.ManageResults, dlg =>
{
dlg.SelectReplicatesTab();
dlg.SelectedChromatograms = new[] { chromToRemove };
dlg.RemoveReplicates();
dlg.IsRemoveCorrespondingLibraries = true;
dlg.OkDialog();
});
}
// Make sure the replicate was removed
var updatedChromatograms = SkylineWindow.Document.Settings.MeasuredResults.Chromatograms;
var findChrom = updatedChromatograms.FirstOrDefault(chrom => ReferenceEquals(chrom, chromToRemove));
Assert.IsNull(findChrom);
// Make sure the library runs corresponding to the replicate were removed
foreach (var dataFile in dataFilesToRemove)
{
Assert.IsFalse(DocumentLibrary.LibraryFiles.FilePaths.Contains(dataFile));
}
}