public override void WriteXml(XmlWriter writer)
{
// Write attributes
writer.WriteAttributeString(@"name", Name);
_windowWidthCalculator.WriteXML(writer, true, false); // Write in legacy format where this is a peptide setting
// Write all measured ion mobilities
if (MeasuredMobilityIons != null)
{
foreach (var im in MeasuredMobilityIons)
{
writer.WriteStartElement(EL.measured_dt); // N.B. EL.measured_dt is a misnomer, this covers all IMS types
var mdt = new MeasuredIonMobility(im.Key.Target, im.Key.Adduct, im.Value);
mdt.WriteXml(writer);
writer.WriteEndElement();
}
}
}
public override void ReadXml(XmlReader reader)
{
var name = reader.Name;
// Read start tag attributes
base.ReadXml(reader);
_windowWidthCalculator = new IonMobilityWindowWidthCalculator(reader, true, false);
// Consume start tag
reader.ReadStartElement();
// Skip over ion_mobility_library stuff that never saw the light of day, but appears in some older tests
while (reader.Name.Equals(@"ion_mobility_library") || reader.Name.Equals(@"regression_dt"))
{
reader.Read();
}
// Read all measured ion mobilities
var dict = new Dictionary <LibKey, IonMobilityAndCCS>();
while (reader.IsStartElement(EL.measured_dt)) // N.B. EL.measured_dt is a misnomer, this covers all IMS types
{
var im = MeasuredIonMobility.Deserialize(reader);
var key = new LibKey(im.Target, im.Charge);
if (!dict.ContainsKey(key))
{
dict.Add(key, im.IonMobilityInfo);
}
}
if (dict.Any())
{
MeasuredMobilityIons = dict;
}
if (reader.Name.Equals(name)) // Make sure we haven't stepped off the end
{
reader.ReadEndElement(); // Consume end tag
}
Validate();
}
