private void reportSpecies(CompoundProcess compoundProcess, MarkdownTracker tracker)
{
if (compoundProcess is ISpeciesDependentCompoundProcess processWithSpecies)
{
tracker.AddValue(PKSimConstants.UI.Species, processWithSpecies.Species.DisplayName);
}
}
public override void Report(Compound compound, MarkdownTracker tracker, int indentationLevel)
{
base.Report(compound, tracker, indentationLevel);
var subLevelIndentation = indentationLevel + 1;
tracker.Add(PKSimConstants.ObjectTypes.Parameter.Pluralize().ToMarkdownLevelElement(subLevelIndentation));
var allAlternatives = compound.AllParameterAlternativeGroups().SelectMany(x => x.AllAlternatives);
var allCompoundParameters = new List <CompoundParameter>();
foreach (var alternative in allAlternatives)
{
var allUserDefinedParameters = alternative.AllUserDefinedParameters().ToList();
allUserDefinedParameters.Each(p => allCompoundParameters.Add(mapFrom(alternative, p)));
}
var allSimpleParameters = compound.AllSimpleParameters().Where(p => !p.IsDefault).ToList();
allSimpleParameters.Each(p => allCompoundParameters.Add(mapFrom(p)));
tracker.Add(allCompoundParameters.ToMarkdownTable());
tracker.Add(PKSimConstants.UI.CalculationMethods.ToMarkdownLevelElement(subLevelIndentation));
_markdownBuilderRepository.Report(compound.CalculationMethodCache, tracker);
tracker.Add(PKSimConstants.UI.Processes.ToMarkdownLevelElement(subLevelIndentation));
compound.AllProcesses().Each(x => _markdownBuilderRepository.Report(x, tracker, subLevelIndentation + 1));
}
public override void Report(Formulation formulation, MarkdownTracker tracker, int indentationLevel)
{
base.Report(formulation, tracker, indentationLevel);
var formulationInfo = _representationInfoRepository.InfoFor(RepresentationObjectType.CONTAINER, formulation.FormulationType);
tracker.AddValue(PKSimConstants.UI.Type, formulationInfo.DisplayName);
ReportParametersIn(formulation, tracker, indentationLevel);
}
public override void Report(PKSimEvent pkSimEvent, MarkdownTracker tracker, int indentationLevel)
{
base.Report(pkSimEvent, tracker, indentationLevel);
var eventTemplate = _eventGroupRepository.FindByName(pkSimEvent.TemplateName);
tracker.AddValue(PKSimConstants.UI.Type, _representationInfoRepository.DisplayNameFor(eventTemplate));
ReportParametersIn(pkSimEvent, tracker, indentationLevel);
}
private void report(PartialProcess partialProcess, MarkdownTracker tracker)
{
tracker.AddValue(PKSimConstants.UI.Molecule, partialProcess.MoleculeName);
switch (partialProcess)
{
case EnzymaticProcess enzymaticProcess when !string.IsNullOrEmpty(enzymaticProcess.MetaboliteName):
tracker.AddValue(PKSimConstants.UI.Metabolite, enzymaticProcess.MetaboliteName);
break;
}
}
public override void Report(IEnumerable <IParameter> parameters, MarkdownTracker tracker, int indentationLevel)
{
var parameterElements = parameters.Select(x => _parameterElementMapper.MapFrom(x)).ToList();
if (!parameterElements.Any())
{
return;
}
tracker.Add(PKSimConstants.ObjectTypes.Parameter.Pluralize().ToMarkdownLevelElement(indentationLevel));
tracker.Add(parameterElements.ToMarkdownTable());
}
public override void Report(CompoundProcess compoundProcess, MarkdownTracker tracker, int indentationLevel)
{
tracker.Add($"{_markdownBuilderRepository.TypeFor(compoundProcess)}: {compoundProcess.Name}".ToMarkdownLevelElement(indentationLevel));
reportSpecies(compoundProcess, tracker);
switch (compoundProcess)
{
case PartialProcess partialProcess:
report(partialProcess, tracker);
break;
}
_markdownBuilderRepository.Report(compoundProcess.AllUserDefinedParameters(), tracker, indentationLevel + 1);
}
public string ExportToMarkdownString(object objectToExport)
{
var builder = _markdownBuilderRepository.BuilderFor(objectToExport);
if (builder == null)
{
return(_reportGenerator.StringReportFor(objectToExport));
}
var tracker = new MarkdownTracker();
builder.Report(objectToExport, tracker);
return(tracker.ToString());
}
public override void Report(CalculationMethodCache calculationMethodCache, MarkdownTracker tracker, int indentationLevel = 0)
{
var calculationMethods = calculationMethodCache
.Select(x => new
{
CalculationMethod = x,
Category = _calculationMethodCategoryRepository.FindBy(x.Category)
})
.Where(x => x.Category.AllItems().Count() > 1)
.Select(x => new
{
Name = _representationInfoRepository.DisplayNameFor(x.Category),
Value = _representationInfoRepository.DisplayNameFor(x.CalculationMethod),
}
);
tracker.Add(calculationMethods.ToMarkdownTable());
}
public abstract void Report(T objectToReport, MarkdownTracker tracker, int indentationLevel);
public void Report(object objectToReport, MarkdownTracker tracker, int indentationLevel = 1)
{
Report(objectToReport.DowncastTo <T>(), tracker, indentationLevel);
}
protected virtual void ReportParametersIn(T buildingBlock, MarkdownTracker tracker, int buildingBlockIndentationLevel)
{
_markdownBuilderRepository.Report(buildingBlock.AllUserDefinedParameters(), tracker, buildingBlockIndentationLevel + 1);
}
public override void Report(T buildingBlock, MarkdownTracker tracker, int indentationLevel)
{
tracker.Add($"{_markdownBuilderRepository.TypeFor(buildingBlock)}: {buildingBlock.Name}".ToMarkdownLevelElement(indentationLevel));
}
public override void Report(T buildingBlock, MarkdownTracker tracker, int indentationLevel)
{
base.Report(buildingBlock, tracker, indentationLevel);
tracker.Add(_reportGenerator.StringReportFor(buildingBlock));
ReportParametersIn(buildingBlock, tracker, indentationLevel);
}