void LerpLight(LightProfile start, LightProfile end, float t) {
if(light == null) {
Debug.LogWarning("--No light found in Jar--//Try adding a light to the jar script");
return;
}
light.color = Color.Lerp(start.color, end.color, t);
light.range = Mathf.Lerp(start.range, end.range, t);
light.intensity = Mathf.Lerp(start.intensity, end.intensity, t);
}
public static void Initialize()
{
//TODO: Change the creation of profiles to GetEnumerableOfType instead of hard coding
ScaleProfile scaleProfile = ScriptableObject.CreateInstance <ScaleProfile>();
AssetDatabase.CreateAsset(scaleProfile, "Assets/VRGazeInteraction/CoreFramework/AnimationFramework/Profiles/ScaleProfile.asset");
MoveProfile moveProfile = ScriptableObject.CreateInstance <MoveProfile>();
AssetDatabase.CreateAsset(moveProfile, "Assets/VRGazeInteraction/CoreFramework/AnimationFramework/Profiles/MoveProfile.asset");
LightProfile lightProfile = ScriptableObject.CreateInstance <LightProfile>();
AssetDatabase.CreateAsset(lightProfile, "Assets/VRGazeInteraction/CoreFramework/AnimationFramework/Profiles/LightProfile.asset");
AssetDatabase.SaveAssets();
Debug.Log("AnimationFramework initialized");
}
public void ValidateScans(SilacCompoundInfo sci, double ppmTolerance)
{
int lightMaxIndex = LightProfile.FindMaxIndex();
int heavyMaxIndex = HeavyProfile.FindMaxIndex();
var identified = ObservedEnvelopes.FindAll(m => m.IsIdentified);
int minIdentifiedScan = identified.Min(m => m.Scan);
int maxIdentifiedScan = identified.Max(m => m.Scan);
ObservedEnvelopes.ForEach(m => m.Enabled = m.Scan >= minIdentifiedScan && m.Scan <= maxIdentifiedScan);
int enabledCount = ObservedEnvelopes.FindAll(m => m.Enabled).Count;
if (enabledCount < 5)
{
int preEnabled = (5 - enabledCount) / 2;
if (preEnabled == 0)
{
preEnabled = 1;
}
int postEnabled = 5 - enabledCount - preEnabled;
int first = ObservedEnvelopes.FindIndex(m => m.Enabled);
for (int i = first - 1; i >= 0 && i >= first - preEnabled; i--)
{
ObservedEnvelopes[i].Enabled = true;
}
int last = ObservedEnvelopes.FindLastIndex(m => m.Enabled);
for (int i = last + 1; i < ObservedEnvelopes.Count && i <= last + postEnabled; i++)
{
ObservedEnvelopes[i].Enabled = true;
}
}
var enabled = ObservedEnvelopes.FindAll(m => m.Enabled);
var lightAccumulator = new MeanStandardDeviation(from ob in enabled
let ppm = PrecursorUtils.mz2ppm(sci.Light.Profile[lightMaxIndex].Mz, sci.Light.Profile[lightMaxIndex].Mz - ob.Light[lightMaxIndex].Mz)
select ppm);
var heavyAccumulator = new MeanStandardDeviation(from ob in enabled
let ppm = PrecursorUtils.mz2ppm(sci.Heavy.Profile[heavyMaxIndex].Mz, sci.Heavy.Profile[heavyMaxIndex].Mz - ob.Heavy[heavyMaxIndex].Mz)
select ppm);
double lightPPM = Math.Max(ppmTolerance, lightAccumulator.StdDev * 3);
double heavyPPM = Math.Max(ppmTolerance, heavyAccumulator.StdDev * 3);
var lightMinPPM = lightAccumulator.Mean - lightPPM;
var lightMaxPPM = lightAccumulator.Mean + lightPPM;
var heavyMinPPM = heavyAccumulator.Mean - heavyPPM;
var heavyMaxPPM = heavyAccumulator.Mean + heavyPPM;
int fixedIndex = ObservedEnvelopes.FindIndex(m => m.IsIdentified);
for (int i = fixedIndex; i >= 0; i--)
{
var pair = ObservedEnvelopes[i];
if (pair.Enabled)
{
continue;
}
if (!AcceptScan(pair, sci, lightMaxIndex, lightMinPPM, lightMaxPPM, heavyMaxIndex, heavyMinPPM, heavyMaxPPM))
{
break;
}
pair.Enabled = true;
}
for (int i = fixedIndex; i < ObservedEnvelopes.Count; i++)
{
var pair = ObservedEnvelopes[i];
if (pair.Enabled)
{
continue;
}
if (!AcceptScan(pair, sci, lightMaxIndex, lightMinPPM, lightMaxPPM, heavyMaxIndex, heavyMinPPM, heavyMaxPPM))
{
break;
}
pair.Enabled = true;
}
}
