public void TestLooplinkCrosslinkLibraryKey()
{
var crosslinkLibraryKey = new CrosslinkLibraryKey(new [] { new PeptideLibraryKey("AKIQDKEGIPPDQQR", 0) }, new[] { new CrosslinkLibraryKey.Crosslink("+138.0681", new[] { new [] { 2, 6 } }) }, 3);
var srmSettings = SrmSettingsList.GetDefault();
srmSettings = srmSettings.ChangePeptideSettings(
srmSettings.PeptideSettings.ChangeModifications(srmSettings.PeptideSettings.Modifications
.ChangeStaticModifications(
srmSettings.PeptideSettings.Modifications.StaticModifications
.Append(new StaticMod("DSS", "K", null, "C8H10O2").ChangeCrosslinkerSettings(
CrosslinkerSettings.EMPTY)).ToList()
)));
var libKeyModificationMatcher = new LibKeyModificationMatcher();
libKeyModificationMatcher.CreateMatches(srmSettings, new[] { new LibKey(crosslinkLibraryKey) },
new MappedList <string, StaticMod>(), new MappedList <string, StaticMod>());
var peptideDocNode = libKeyModificationMatcher.CreateDocNodeFromSettings(new LibKey(crosslinkLibraryKey),
new Peptide("AKIQDKEGIPPDQQR"), SrmSettingsDiff.ALL, out _);
Assert.IsNotNull(peptideDocNode);
Assert.IsNotNull(peptideDocNode.ExplicitMods);
Assert.AreEqual(1, peptideDocNode.ExplicitMods.Crosslinks.Count);
Assert.AreEqual(null, peptideDocNode.ExplicitMods.Crosslinks[0].Value.Peptide);
}
