/// <summary>
/// loads the transcript cache
/// </summary>
private static void LoadTranscriptCache(Stream stream, int numRefSeqs,
out IIntervalForest <Transcript> transcriptIntervalForest)
{
GlobalCache cache;
using (var reader = new GlobalCacheReader(stream)) cache = reader.Read();
transcriptIntervalForest = IntervalArrayFactory.CreateIntervalForest(cache.Transcripts, numRefSeqs);
}
public void CreateIntervalForest_WithIntervals()
{
var intervalForest = IntervalArrayFactory.CreateIntervalForest(_regulatoryRegions, 17);
var observedResult = intervalForest.OverlapsAny(_chr11.Index, 160, 170);
Assert.True(observedResult);
}
public void CreateIntervalForest_NullIntervals()
{
var intervalForest = IntervalArrayFactory.CreateIntervalForest<IRegulatoryRegion>(null, 17);
Assert.True(intervalForest is NullIntervalSearch<IRegulatoryRegion>);
}
public static IIntervalForest <Transcript> GetIntervalForest(Transcript[] transcripts, int numRefSeqs)
{
return(transcripts == null
? null
: IntervalArrayFactory.CreateIntervalForest(transcripts, numRefSeqs));
}